guix-bioinformatics/python2-htmlgen-Applied-Deb-patch.patch

From c0b16bbad9b8e396bdb64c638a3540547acfa3a5 Mon Sep 17 00:00:00 2001
From: Pjotr Prins <pjotr.public01@thebird.nl>
Date: Sat, 13 Feb 2016 13:39:03 +0100
Subject: [PATCH 1/2] Applied Deb patch

---
 Formtools.py     |  1 -
 HTMLcalendar.py  |  9 ++++-----
 HTMLgen.py       |  6 +++---
 HTMLtest.py      | 12 ++++++------
 HTMLutil.py      | 19 +++++++++----------
 ImagePaletteH.py |  2 +-
 Makefile         | 10 ++++++++++
 NavLinks.py      |  1 -
 barchart.py      |  1 -
 colorcube.py     |  1 -
 10 files changed, 33 insertions(+), 29 deletions(-)

diff --git a/Formtools.py b/Formtools.py
index bb598f4..1dabccd 100644
--- a/Formtools.py
+++ b/Formtools.py
@@ -1,4 +1,3 @@
-#! /usr/bin/env python
 "Provide some supporting classes to simplify Input Forms with HTMLgen"
 #'$Id: Formtools.py,v 1.1 1999/04/19 23:45:36 friedric Exp friedric $'
 # COPYRIGHT (C) 1999  ROBIN FRIEDRICH  email: Robin.Friedrich@pdq.net
diff --git a/HTMLcalendar.py b/HTMLcalendar.py
index 3a03915..35edf27 100644
--- a/HTMLcalendar.py
+++ b/HTMLcalendar.py
@@ -1,4 +1,3 @@
-#!/usr/bin/env python
 # COPYRIGHT (C) 1997  ROBIN FRIEDRICH
 # Permission to  use, copy, modify, and distribute this software and its
 # documentation  for  any  purpose  and  without fee  is hereby granted,
@@ -212,12 +211,12 @@ def makeint(value):
             return value
         else:
             raise TypeError, ('cannot convert to int', value)
-import regex
-datepat = regex.compile('^ *\([0-9*][0-9]?\)[/-]' #first 2 char date field
+import re
+datepat = re.compile('^ *\([0-9*][0-9]?\)[/-]' #first 2 char date field
                         '\([0-9][0-9]?\)[/-]?'    #second 2 char date field
                         '\([12][0-9][0-9][0-9]\)?[ \t]*:') #optional year field
-daypat  = regex.compile('^ *\('+string.join(day_name,'\|')+'\)')
-timepat = regex.compile('\([0-9][0-9]?\):\([0-9][0-9]\)')
+daypat  = re.compile('^ *\('+string.join(day_name,'\|')+'\)')
+timepat = re.compile('\([0-9][0-9]?\):\([0-9][0-9]\)')
 
 def read_appt_file(filename):
     """Parsing function.
diff --git a/HTMLgen.py b/HTMLgen.py
index 10ecd28..dbdbd81 100644
--- a/HTMLgen.py
+++ b/HTMLgen.py
@@ -284,7 +284,7 @@ class SimpleDocument(BasicDocument):
         if self.meta: s.append(str(self.meta))
         if self.base: s.append(str(self.base))
         if self.stylesheet:
-            s.append('\n <LINK rel=stylesheet href="%s" type=text/css title="%s">\n' \
+            s.append('\n <LINK rel=stylesheet href="%s" type="text/css" title="%s">\n' \
                      % (self.stylesheet, self.stylesheet))
         if self.style:
             s.append('\n<STYLE>\n<!--\n%s\n-->\n</style>\n' % self.style)
@@ -1083,7 +1083,7 @@ class List(UserList.UserList):
 
         Overloaded by child classes to represent other list styles.
         """
-        return '%s<LI>%s\n' % (self.pad*self.lvl, item)
+        return '%s<LI>%s</LI>\n' % (self.pad*self.lvl, item)
 
     def start_element(self):
         """Generic creator for the HTML element opening tag.
@@ -2463,7 +2463,7 @@ class URL:
         import urlparse
         self.unparse = urlparse.urlunparse
         self.proto, self.node, self.path, self.params, self.query, self.fragment = \
-                    urlparse(url)
+                    urlparse.urlparse(url)
         self.dir, self.file = self.split(self.path)
 
     def split(self, p):
diff --git a/HTMLtest.py b/HTMLtest.py
index 5850a04..283233f 100755
--- a/HTMLtest.py
+++ b/HTMLtest.py
@@ -1,8 +1,8 @@
-#!/bin/env python
+#!/usr/bin/env python
 
 """Test script which generates the online documentation for HTMLgen.
 """
-import string, regex, regsub, os, time, glob
+import string, re, os, time, glob
 from HTMLcolors import *
 from HTMLgen import *
 import HTMLgen  #only so I can pick off the __version__
@@ -232,11 +232,11 @@ def sample1(filename, aft=None, fore=None, top=None, home=None):
     doc.email = 'jefferson@montecello.virginia.gov'
     doc.logo = ('../image/eagle21.gif', 64, 54)
     # parse Declaration of Independence
-    re_hline = regex.compile('^--+$')
-    re_title = regex.compile('^Title:\(.*$\)')
+    re_hline = re.compile('^--+$')
+    re_title = re.compile('^Title:\(.*$\)')
     font2 = Font(size='+2')
     s = open(os.path.join(datadir, 'DoI.txt')).read()
-    paragraphs = regsub.split(s, '\n\([\t ]*\n\)+')
+    paragraphs = re.split(s, '\n\([\t ]*\n\)+')
     for para in paragraphs:
         if not para: continue
         if re_title.search(para) > -1:
@@ -263,7 +263,7 @@ def sample2(filename, aft=None, fore=None, top=None, home=None):
     #Ok parse that file
     f = open(mpath(os.path.join(datadir, 'parrot.txt')))
     line = f.readline()
-    re_dialog = regex.compile('\(^[OC].*:\)\(.*\)')
+    re_dialog = re.compile('\(^[OC].*:\)\(.*\)')
     while line:
         if re_dialog.search(line) > -1:
             role, prose = re_dialog.group(1,2)
diff --git a/HTMLutil.py b/HTMLutil.py
index 2baf168..9a877e5 100755
--- a/HTMLutil.py
+++ b/HTMLutil.py
@@ -1,4 +1,3 @@
-#!/usr/bin/env python
 """This module provides utility functions/classes associated with HTMLgen.
 
 This is functionality use by HTMLgen script writers rather than by HTMLgen
@@ -19,7 +18,7 @@ itself. (i.e. HTMLgen.py is not dependant on this module.)
 # OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
 # PERFORMANCE OF THIS SOFTWARE.
 __version__ = '$Id: HTMLutil.py,v 1.3 1998/05/28 20:14:52 friedric Exp $'
-import string, regex, os
+import string, re, os
 import HTMLgen, HTMLcolors
 from types import *
 
@@ -79,7 +78,7 @@ def been_marked(text):
     """Determine if the text have been marked by a previous gsub.
     (ugly hack but it works)
     """
-    if regex.search('\(</?FONT\)\|\(</?STRONG\)', text) > -1:
+    if re.search('\(</?FONT\)\|\(</?STRONG\)', text) > -1:
         return 1
     else: 
         return 0
@@ -125,13 +124,13 @@ def global_substitute(search_func, repl_func, s):
 not_backslash = "[^\\\\]"
 triple_single = "'''"
 triple_double = '"""'
-_doc_start_re = regex.compile(
+_doc_start_re = re.compile(
     "\(^\|" + not_backslash + "\)" # bol or not backslash
     + "\(" + triple_single + "\|" + triple_double + "\)" )
 single_re = not_backslash + triple_single
 double_re = not_backslash + triple_double
-_triple_re = { triple_single : regex.compile(single_re),
-               triple_double : regex.compile(double_re) }
+_triple_re = { triple_single : re.compile(single_re),
+               triple_double : re.compile(double_re) }
 
 del not_backslash, triple_single, triple_double, \
     single_re, double_re
@@ -150,13 +149,13 @@ def find_docstring( s, begin=0):
         return (None, None)
     return startquote, quotefinder.regs[0][1]
 
-string_re = regex.compile('\(\(\'[^\'\n]*\'\)\|\("[^"\n]"\)\)')
+string_re = re.compile('\(\(\'[^\'\n]*\'\)\|\("[^"\n]"\)\)')
 def find_string_literal( s, begin=0 ):
     if string_re.search(s, begin) > -1:
         return string_re.regs[1]
     return (None, None)
 
-comment_re = regex.compile('#.*$')
+comment_re = re.compile('#.*$')
 def find_comment( s, begin=0 ):
     while comment_re.search(s, begin) > -1:
         if been_marked(comment_re.group(0)):
@@ -166,13 +165,13 @@ def find_comment( s, begin=0 ):
     return (None, None)
 
 Name = '[a-zA-Z_][a-zA-Z0-9_]*'
-func_re = regex.compile('\(^[ \t]*def[ \t]+' +Name+ '\)[ \t]*(') 
+func_re = re.compile('\(^[ \t]*def[ \t]+' +Name+ '\)[ \t]*(') 
 def find_function( s, begin=0 ):
     if func_re.search(s, begin) > -1:
         return func_re.regs[1]
     return (None, None)
 
-class_re = regex.compile('\(^[ \t]*class[ \t]+' +Name+ '\)[ \t]*[(:]')
+class_re = re.compile('\(^[ \t]*class[ \t]+' +Name+ '\)[ \t]*[(:]')
 def find_class( s, begin=0 ):
     if class_re.search(s, begin) > -1:
         return class_re.regs[1]
diff --git a/ImagePaletteH.py b/ImagePaletteH.py
index 83bb867..e723847 100644
--- a/ImagePaletteH.py
+++ b/ImagePaletteH.py
@@ -70,7 +70,7 @@ def negative(mode = "RGB"):
     return ImagePalette(mode, palette * len(mode))
 
 def random(mode = "RGB"):
-    from whrandom import randint
+#    from whrandom import randint
     palette = map(lambda a: randint(0, 255), [0]*256*len(mode))
     return ImagePalette(mode, palette)
 
diff --git a/Makefile b/Makefile
index 1788fa6..e1ec846 100644
--- a/Makefile
+++ b/Makefile
@@ -62,6 +62,16 @@ install: compileall
 	python installp.py -f $(MODULES) $(MODULESC) $(PIL) $(PILC)
 	@echo Installation of $(PACKAGE) done.
 
+debinstall:
+	if [ -z "$(PYLIBDIR)" ]; then \
+	  echo "Unset PYLIBDIR."; \
+	  exit 1; \
+	fi; \
+	for f in $(MODULES) $(PIL); do \
+	  install -m 644 $$f $(PYLIBDIR)/; \
+	done
+	@echo Installation of $(PACKAGE) done.
+
 checkin:
 	ci -u $(MODULES) $(PIL) $(EXTRAS) $(TEST) Makefile
 
diff --git a/NavLinks.py b/NavLinks.py
index fcecbb3..51ef774 100644
--- a/NavLinks.py
+++ b/NavLinks.py
@@ -1,4 +1,3 @@
-#!/usr/bin/env python
 #'$Id: NavLinks.py,v 1.1 1999/02/04 04:54:29 friedric Exp friedric $'
 # COPYRIGHT (C) 1999  ROBIN FRIEDRICH  email:Robin.Friedrich@pdq.net
 # Permission to use, copy, modify, and distribute this software and
diff --git a/barchart.py b/barchart.py
index 882cde5..a901fe4 100755
--- a/barchart.py
+++ b/barchart.py
@@ -1,4 +1,3 @@
-#!/usr/bin/env python
 
 """Provides BarChart class which creates HTML 1D bar charts,
 and StackedBarChart class to deal with multiple data plotting
diff --git a/colorcube.py b/colorcube.py
index be91154..94fa7dd 100644
--- a/colorcube.py
+++ b/colorcube.py
@@ -1,4 +1,3 @@
-#!/usr/bin/env python
 
 """Utility to generate a table of browser safe colors.
 """
-- 
2.1.4