diff options
Diffstat (limited to 'gn/packages/genenetwork.scm')
| -rw-r--r-- | gn/packages/genenetwork.scm | 30 |
1 files changed, 29 insertions, 1 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index 08a8954..34178b5 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -91,7 +91,32 @@ (description #f) (license #f))) -(define-public qtlreaper ; guix obsolete - but used in GN2 +(define-public qn-server ; guix obsolete - but used in GN2 + (let ((commit "dd9c7fb2a9d5fa40b4054e1bcb7c57905d98d5f8")) + (package + (name "qn-server") + (version (string-append "1.1-gn2-" (string-take commit 7) )) + (source (origin + (method git-fetch) + (uri (git-reference + ;; (url "https://github.com/genenetwork/genenetwork2.git") + (url "https://github.com/pjotrp/QTLreaper.git") + (commit commit))) + (file-name (string-append name "-" (string-take commit 7))) + (sha256 + (base32 + "1ldcvyk8y8w6f4ci04hzx85sknd5a3h424p5bfi4fz32sm2p7fja")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:tests? #f)) ; no 'setup.py test' really! + (home-page "") + (synopsis "GeneNetwork REST API") + (description +"") + (license license:gpl2+)))) + +(define-public qtlreaper (let ((commit "dd9c7fb2a9d5fa40b4054e1bcb7c57905d98d5f8")) (package (name "qtlreaper") @@ -143,6 +168,7 @@ location of a putative QTL.") ("python" ,python-2) ;; probably superfluous ("git" ,git) ("which" ,which) + ("grep" ,grep) ("r" ,r) ("r-ctl" ,r-ctl) ("r-phewas" ,r-phewas) @@ -198,6 +224,8 @@ location of a putative QTL.") (("echo") (which "echo")) (("redis-server") (which "redis-server")) (("git") (which "git")) + (("grep") (which "grep")) + (("rm") (which "rm")) (("which") (which "which")) ; three wiches in a row! )#t)) (add-before 'install 'fix-paths |