diff options
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index f319532..27d9fb7 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -79,3 +79,42 @@ (synopsis #f) (description #f) (license #f))) + +(define-public r-wgcna +(package + (name "r-wgcna") + (version "1.48") + (source + (origin + (method url-fetch) + (uri (cran-uri "WGCNA" version)) + (sha256 + (base32 + "18yl2v3s279saq318vd5hlwnqfm89rxmjjji778d2d26vviaf6bn")))) + (properties `((upstream-name . "WGCNA"))) + (build-system r-build-system) + ;; (propagated-inputs + ;; `( ;; ("r-annotationdbi" ,r-annotationdbi) + ;; ("r-doparallel" ,r-doparallel) + ;; ("r-dynamictreecut" ,r-dynamictreecut) + ;; ("r-fastcluster" ,r-fastcluster) + ;; ("r-foreach" ,r-foreach) + ;; ("r-go.db" ,r-go.db) + ;; ("r-grdevices" ,r-grdevices) + ;; ("r-hmisc" ,r-hmisc) + ;; ("r-impute" ,r-impute) + ;; ("r-matrixstats" ,r-matrixstats) + ;; ("r-parallel" ,r-parallel) + ;; ("r-preprocesscore" ,r-preprocesscore) + ;; ("r-splines" ,r-splines) + ;; ("r-stats" ,r-stats) + ;; ("r-survival" ,r-survival) + ;; ("r-utils" ,r-utils))) + (home-page + "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/") + (synopsis + "Weighted Correlation Network Analysis") + (description + "Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.") + (license license:gpl2+))) + |