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authorEfraim Flashner2021-07-12 15:25:43 +0300
committerEfraim Flashner2021-07-12 15:25:43 +0300
commiteecc939c493e1d5d0aa11c2831ce847be47a1c6f (patch)
tree1ac7cfe4e58c7af881dbc5dd1ba4af34ac64b4c9 /gn
parent183b6e2ac267e1ac171763e80a3a5355d9fb91dd (diff)
downloadguix-bioinformatics-eecc939c493e1d5d0aa11c2831ce847be47a1c6f.tar.gz
gn: Add ccwl.
* gn/packages/ccwl.scm (ccwl): New variable.
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/ccwl.scm46
1 files changed, 46 insertions, 0 deletions
diff --git a/gn/packages/ccwl.scm b/gn/packages/ccwl.scm
new file mode 100644
index 0000000..6976143
--- /dev/null
+++ b/gn/packages/ccwl.scm
@@ -0,0 +1,46 @@
+(define-module (gn packages ccwl)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (guix packages)
+  #:use-module (guix utils)
+  #:use-module (guix download)
+  #:use-module (guix build-system gnu)
+  #:use-module (gnu packages bioinformatics)
+  #:use-module (gnu packages compression)
+  #:use-module (gnu packages graphviz)
+  #:use-module (gnu packages guile)
+  #:use-module (gnu packages pkg-config)
+  #:use-module (gnu packages skribilo))
+
+(define-public ccwl
+  (package
+    (name "ccwl")
+    (version "0.1.0")
+    (source (origin
+             (method url-fetch)
+             (uri (string-append "https://github.com/arunisaac/ccwl"
+                                 "/releases/download/v" version
+                                 "/ccwl-" version ".tar.lz"))
+             (sha256
+              (base32 "0zj8rsmh82ip9ngq65is3yfbpn9y0acil4llwrr4jw2fiyyji7x1"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:make-flags '("GUILE_AUTO_COMPILE=0")))   ;to prevent guild warnings
+    (propagated-inputs
+     `(("guile" ,guile-3.0)))
+    (native-inputs
+     `(("guile" ,guile-3.0)
+       ("lzip" ,lzip)
+       ("pkg-config" ,pkg-config)
+       ;; For the documentation:
+       ("cwltool" ,cwltool)
+       ("graphviz" ,graphviz)
+       ("skribilo" ,skribilo)))
+    (home-page "https://ccwl.systemreboot.net/")
+    (synopsis "Concise Common Workflow Language")
+    (description
+     "The @acronym{Concise Common Workflow Languager, ccwl} is a concise syntax
+to express CWL workflows.  It is implemented as an @acronym{Embedded Domain
+Specific Language, EDSL} in the Scheme programming language, a minimalist
+dialect of the Lisp family of programming languages.  @code{ccwl} is a compiler
+to generate CWL workflows from concise descriptions in ccwl.")
+    (license license:gpl3+)))