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author | Efraim Flashner | 2021-09-17 12:27:01 +0300 |
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committer | Efraim Flashner | 2021-09-17 12:27:01 +0300 |
commit | 5f66ae588b856088ed82395b90de4a67140b0b63 (patch) | |
tree | efe9d182b9572f4d87d014fb0612bb9eafad4a89 /gn | |
parent | 0684b02dacdd6fcbb84629474744b94554b4305c (diff) | |
download | guix-bioinformatics-5f66ae588b856088ed82395b90de4a67140b0b63.tar.gz |
gn: julia packaging updates, for upstreaming
Diffstat (limited to 'gn')
-rw-r--r-- | gn/packages/julia.scm | 33 |
1 files changed, 21 insertions, 12 deletions
diff --git a/gn/packages/julia.scm b/gn/packages/julia.scm index dc904ee..8042fac 100644 --- a/gn/packages/julia.scm +++ b/gn/packages/julia.scm @@ -152,6 +152,8 @@ times faster than a R/qtl linear model genome scan using 16 threads.") (build-system julia-build-system) (arguments `(#:tests? #f)) ; Test suite needs a copy of the Julia package repository. + (native-inputs + `(("julia-example" ,julia-example))) (home-page "https://github.com/JuliaLang/PackageCompiler.jl") (synopsis "Compile your Julia Package") (description "PackageCompiler is a Julia package with two main purposes: @@ -437,9 +439,9 @@ properties @end enumerate") (license license:expat))) -;; TODO: Unbundle extra assets? assets/html/ -;; see also: js inputs: src/Writers/HTMLWriter.jl -;; latex inputs: src/Writers/LaTeXWriter.jl +;; ready to upstream! +;; By removing all the javascript and css downloads any HTML documentation +;; produced by this package will not be very useful. (define-public julia-documenter (package (name "julia-documenter") @@ -461,19 +463,25 @@ properties (lambda* (#:key inputs #:allow-other-keys) (substitute* "src/Deps.jl" (("pip install") - (string-append (assoc-ref inputs "python") "/bin/pip install"))) + (string-append (assoc-ref inputs "python") + "/bin/pip install"))) #t)) - ) - )) + (add-after 'unpack 'remove-javascript-downloads + (lambda _ + (substitute* "src/Writers/HTMLWriter.jl" + (("cdnjs.cloudflare.com") "example.com")) + ;; Removing the javascript downloads causes these tests fail. + (substitute* "test/examples/tests.jl" + ((".*Main\\.examples_html_doc.*") "") + ((".*Main\\.examples_html_mathjax3_doc.*") "")) + #t))))) (propagated-inputs `(("julia-ansicoloredprinters" ,julia-ansicoloredprinters) ("julia-docstringextensions" ,julia-docstringextensions) ("julia-iocapture" ,julia-iocapture) ("julia-json" ,julia-json))) (inputs - `( - ("python" ,python-wrapper) - )) + `(("python" ,python-wrapper))) (native-inputs `(("git" ,(S "git-minimal")) ("julia-documentermarkdown" ,julia-documentermarkdown) @@ -510,11 +518,12 @@ properties (substitute* '("assets/html/documenter.js" "assets/html/search.js" "src/Writers/HTMLWriter.jl") - (("https.*(min|css|js)$") "")) + (("cdnjs.cloudflare.com") "example.com")) #t))))) (propagated-inputs `(("julia-docstringextensions" ,julia-docstringextensions) ("julia-json" ,julia-json))) + (inputs `()) (native-inputs `()) (properties '((hidden? . #t))))) @@ -657,8 +666,8 @@ ANSI escape codes to another format.") `(("julia-jllwrappers" ,julia-jllwrappers))) (home-page "https://github.com/JuliaBinaryWrappers/libsass_jll.jl") (synopsis "Julia wrapper for libsass") - (description "This package provides a wrapper for libsass It is an -autogenerated source package constructed using @code{BinaryBuilder.jl}. The + (description "This package provides a wrapper for libsass. It is an +autogenerated source package constructed using @code{BinaryBuilder.jl}. The originating @code{build_tarballs.jl} script can be found on the community build tree Yggdrasil.") (license license:expat)))) |