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authorEfraim Flashner2021-08-29 16:17:02 +0300
committerEfraim Flashner2021-08-29 16:17:02 +0300
commite438bb8ffa9f1bf03d57c1ec723506a95cba8ab4 (patch)
treef52db52c2b87df239b62cd8f57e14df4e9d90b77 /gn/packages
parent01cbe5a2e9b682cac8862888d86b44078b7eac92 (diff)
downloadguix-bioinformatics-e438bb8ffa9f1bf03d57c1ec723506a95cba8ab4.tar.gz
work on packaging bazel
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/bazel.scm785
-rw-r--r--gn/packages/tensorflow.scm302
2 files changed, 1087 insertions, 0 deletions
diff --git a/gn/packages/bazel.scm b/gn/packages/bazel.scm
new file mode 100644
index 0000000..07d1dbd
--- /dev/null
+++ b/gn/packages/bazel.scm
@@ -0,0 +1,785 @@
+(define-module (gn packages bazel)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix utils)
+ #:use-module (guix packages)
+ #:use-module (guix download)
+ #:use-module (guix git-download)
+ #:use-module (guix build-system ant)
+ #:use-module (guix build-system gnu)
+ #:use-module (gnu packages backup)
+ #:use-module (gnu packages)
+ #:use-module (gnu packages base)
+ #:use-module (gnu packages bootstrap)
+ #:use-module (gnu packages compression)
+ #:use-module (gnu packages elf)
+ #:use-module (gnu packages gcc)
+ #:use-module (gnu packages java)
+ #:use-module (gnu packages java-compression)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages protobuf)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages rpc)
+ #:use-module (gnu packages web)
+ #:use-module (gn packages java)
+ )
+
+(define-public bazel
+ (package
+ (name "bazel")
+ (version "3.7.2")
+ (source (origin
+ (method url-fetch/zipbomb)
+ (uri (string-append "https://github.com/bazelbuild/bazel/"
+ "releases/download/" version "/bazel-"
+ version "-dist.zip"))
+ (sha256
+ (base32
+ "1cfrbs23lg0jnl22ddylx3clcjw7bdpbix7r5lqibab346s5n9fy"))
+ (patches (search-patches
+ "bazel-workspace.patch"
+ ))
+ ))
+ (build-system gnu-build-system)
+ (arguments
+ `(
+ #:tests? #f
+ #:make-flags '("EXTRA_BAZEL_ARGS=\"--host_javabase=@local_jdk//:jdk\"")
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (add-before 'build 'pre-build
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (jdk (assoc-ref inputs "jdk"))
+ ;(HOME (string-append (getcwd) "/" ,name))
+ (HOME (getcwd))
+ (bazelrc (string-append HOME "/user.bazelrc"))
+ (srcdeps (string-append HOME "/srcdeps"))
+ )
+ (setenv "HOME" HOME)
+ (setenv "PROTOC" (string-append (assoc-ref inputs "protobuf")
+ "/bin/protoc"))
+ (with-output-to-file bazelrc
+ (lambda _
+ (format #t
+ "~@
+ --noremote_accept_cached~@
+ --verbose_failures~@
+ --subcommands~@
+ --compilation_mode dbg~@
+ --action_env=CCACHE_DISABLE~@
+ --action_env=CCACHE_TEMPDIR~@
+ --sandbox_debug~@
+ --sandbox_writable_path=${CCACHE_TEMPDIR}~@
+ --override_repository=com_google_protobuf=${CURDIR}/tools/distributions/debian/protobuf~@
+ --override_repository=remote_java_tools_linux=${CURDIR}/mock_repos/remote_java_tools_linux~@
+ --override_repository=bazel_skylib=${CURDIR}/mock_repos/bazel_skylib~@
+ --override_repository=io_bazel_skydoc=${CURDIR}/mock_repos/bazel_skydoc~@
+ --override_repository=rules_pkg=${CURDIR}/mock_repos/rules_pkg~@
+ --override_repository=rules_cc=${CURDIR}/mock_repos/rules_cc~@
+ --override_repository=rules_java=${CURDIR}/mock_repos/rules_java~@
+ --override_repository=rules_proto=${CURDIR}/mock_repos/rules_proto~@
+ --override_repository=platforms=${CURDIR}/mock_repos/platforms~@
+ --distinct_host_configuration=false~@
+ ~@
+ startup --server_javabase=~a~@
+ startup --batch~@
+ #build --distdir=distdir~@
+ #fetch --distdir=distdir~@
+ #query --distdir=distdir~@
+ #build --verbose_failure~@
+ build --color=yes~@
+ build --action_env=PATH=~a~@
+ build --action_env=PYTHON_LIB_PATH=~a~@
+ build --define=PREFIX=~a~@
+ build --host_javabase='@local_jdk//:jdk'~%"
+ jdk
+ (getenv "PATH") (getenv "PYTHONPATH") out)))
+ (newline)
+ (invoke "cat" bazelrc)
+ (newline)
+
+ (substitute* ".bazelrc"
+ (("PREFIX=/usr") (string-append "PREFIX=" out)))
+
+ ;; Use the local javac.
+ (substitute* '(
+ "src/java_tools/buildjar/BUILD"
+ "src/java_tools/buildjar/java/com/google/devtools/build/buildjar/BUILD"
+ "src/java_tools/buildjar/java/com/google/devtools/build/buildjar/javac/plugins/BUILD"
+ "src/java_tools/buildjar/java/com/google/devtools/build/buildjar/javac/statistics/BUILD"
+ "src/java_tools/buildjar/java/com/google/devtools/build/java/turbine/javac/BUILD"
+ )
+ ((".*//third_party/java/jdk/langtools:javac.*") ""))
+
+ #t)))
+ ;(add-after 'unpack 'plop-vendored-tarballs
+ ; (lambda* (#:key inputs #:allow-other-keys)
+ ; (mkdir "distdir")
+ ; (copy-file (assoc-ref inputs "bazel_toolchains")
+ ; "distdir/bazel-toolchains-3.1.0.tar.gz")
+ ; #t))
+ (add-after 'patch-source-shebangs 'patch-more-shebangs
+ (lambda _
+ (substitute* '(
+ "tools/build_rules/test_rules.bzl"
+ "tools/cpp/cc_toolchain_config.bzl"
+ )
+ (("/bin/bash") (which "bash")))
+ (substitute* "tools/cpp/cc_toolchain_config.bzl"
+ (("/usr/bin/ar") (which "ar"))
+ (("/usr/bin/ld") (which "ld"))
+ (("/usr/bin/cpp") (which "cpp"))
+ ;(("/usr/bin/dwp") (which "dwp"))
+ (("/usr/bin/gcc") (which "gcc"))
+ (("/usr/bin/gcov") (which "gcov"))
+ (("/usr/bin/nm") (which "nm"))
+ (("/usr/bin/objcopy") (which "objcopy"))
+ (("/usr/bin/objdump") (which "objdump"))
+ (("/usr/bin/strip") (which "strip"))
+ )
+ (substitute* "src/main/tools/BUILD"
+ (("-lm") "-lm '-lgcc"))
+ #t))
+ (replace 'build
+ (lambda* (#:key inputs #:allow-other-keys)
+ (setenv "BAZEL_SH" (which "bash"))
+ (setenv "CC" ,(cc-for-target))
+
+ (setenv "BAZEL_JAVAC_OPTS" "-J-Xmx4096m")
+ ;(setenv "BAZEL_JAVAC_OPTS" "-J-Xmx2g -J-Xms200m")
+
+ (setenv "EXTRA_BAZEL_ARGS" "--host_javabase=@local_jdk//:jdk")
+ (setenv "VERBOSE" "1")
+ (setenv "JAVA_HOME" (assoc-ref inputs "jdk"))
+ ;(invoke "bazel" "build" "//src:bazel")
+ (invoke "./compile.sh")
+ ))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
+ (mkdir-p bin)
+ (install-file "output/bazel" bin)
+ #t)))
+ )
+ ))
+ (native-inputs
+ `(
+ ("bazel" ,bazel-bootstrap)
+ ("jdk" ,openjdk11 "jdk")
+ ("protobuf" ,protobuf)
+ ("python" ,python-wrapper)
+ ("unzip" ,unzip)
+ ("which" ,which)
+
+ ("java-commons-collections" ,java-commons-collections)
+ ("java-commons-compress" ,java-commons-compress)
+ ("java-commons-lang" ,java-commons-lang3)
+ ("java-commons-logging-minimal" ,java-commons-logging-minimal)
+ ("java-commons-pool" ,java-commons-pool)
+ ("java-dd-plist" ,java-dd-plist)
+ ("java-diff-utils" ,java-diff-utils)
+ ;("java-error-prone" ,java-error-prone)
+ ("java-escapevelocity" ,java-escapevelocity)
+ ;; libgeronimo-annotation-1.3-spec-java
+ ;; libgoogle-api-client-java
+ ;; libgoogle-auth-java
+ ;; libgoogle-auto-common-java
+ ;; libgoogle-auto-service-java
+ ;; libgoogle-auto-value-java
+ ;; libgoogle-flogger-java
+ ;; libgoogle-gson-java
+ ;; libgoogle-http-client-java
+ ;; ("grpc-java" ,grpc-java)
+ ("java-guava" ,java-guava-25)
+ ("java-fasterxml-jackson-core" ,java-fasterxml-jackson-core) ; fasterxml?
+ ;; libjacoco-java
+ ("java-jarjar" ,java-jarjar)
+ ;; libjava-allocation-instrumenter-java
+ ("java-javapoet" ,java-javapoet)
+ ("java-jaxb-api" ,java-javax-xml-bind)
+ ("java-jcip-annotations" ,java-jcip-annotations)
+ ("java-jcommander" ,java-jcommander)
+ ("java-jformatstring" ,java-jformatstring)
+ ("java-jsr305" ,java-jsr305)
+ ;; libnetty-tcnative-java
+ ;; libopencensus-java
+ ;; libproguard-java
+ ("java-protobuf" ,java-protobuf)
+ ("java-tomcat" ,java-tomcat)
+ ("java-truth" ,java-truth)
+ ("java-xz" ,java-xz)
+
+ ;; protobuf-compiler-grpc
+ ;; protobuf-compiler-grpc-java-plugin
+
+
+ ;("bazel_toolchains"
+ ; ,(origin
+ ; (method url-fetch)
+ ; (uri "https://mirror.bazel.build/github.com/bazelbuild/bazel-toolchains/releases/download/3.1.0/bazel-toolchains-3.1.0.tar.gz")
+ ; (file-name "bazel-toolchains-3.1.0.tar.gz")
+ ; (sha256
+ ; (base32
+ ; "1wha3nmnszkk1wgaa4p9rfgmx5aa7c9ffs3d79m8d8y7w4im8svj"))))
+ ))
+ (home-page "https://bazel.build/")
+ (synopsis "")
+ (description "")
+ (license license:asl2.0)))
+
+(define-public bazel-bootstrap
+ (package
+ (name "bazel-bootstrap")
+ (version "3.7.2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/bazelbuild/bazel/"
+ "releases/download/" version
+ "/bazel-" version "-linux-x86_64"))
+ (sha256
+ (base32
+ "03gwwka4m1cn95nzc0bmjwqshdlh9m32v8r554rksk4a37p0pp3h"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:tests? #f
+ #:strip-binaries? #f
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'unpack)
+ (delete 'configure)
+ (replace 'build
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let* ((binary (assoc-ref inputs "source"))
+ (out (assoc-ref outputs "out"))
+ (libc (assoc-ref inputs "libc"))
+ (ld-so (string-append libc ,(glibc-dynamic-linker)))
+ (rpath (string-append (assoc-ref inputs "gcc:lib") "/lib")))
+ (copy-file binary "bazel")
+ (system "chmod 755 bazel")
+ (invoke "patchelf" "--set-rpath" rpath "bazel")
+ (invoke "patchelf" "--set-interpreter" ld-so "bazel"))
+ #t))
+ ;; THIS NEEDS NETWORK ACCESS
+ ;(replace 'install-license-files
+ ; (lambda* (#:key outputs #:allow-other-keys)
+ ; (let* ((out (assoc-ref outputs "out"))
+ ; (bazel (string-append out "/bin/bazel"))
+ ; (license (string-append out "/share/doc/"
+ ; ,name "-" ,version "/LICENSE")))
+ ; (setenv "HOME" (getcwd))
+ ; (mkdir-p (dirname license))
+ ; (call-with-output-file license
+ ; (lambda _
+ ; (invoke bazel "license")))
+ ; #t)))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin")))
+ (install-file "bazel" bin)
+ #t))))))
+ (native-inputs
+ `(("patchelf" ,patchelf)))
+ (inputs
+ `(("gcc:lib" ,(canonical-package gcc) "lib")))
+ (propagated-inputs
+ `(("jdk" ,openjdk11 "jdk")))
+ (home-page "https://bazel.build/")
+ (synopsis "Build and test software of any size, quickly and reliably")
+ (description "Bazel is a build tool that builds code quickly and reliably.
+It is used to build the majority of Google's software, and thus it has been
+designed to handle build problems present in Google's development environment.")
+ (supported-systems '("x86_64-linux"))
+ (license license:asl2.0)))
+
+(define-public bazel-bootstrap-3.1
+ (package
+ (inherit bazel-bootstrap)
+ (name "bazel-bootstrap")
+ (version "3.1.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/bazelbuild/bazel/"
+ "releases/download/" version
+ "/bazel-" version "-linux-x86_64"))
+ (sha256
+ (base32
+ "1jpdah6qr7n1mpld6yilv5yic7jy8bfiy7g2bk7nc0kkzbs38d3m"))))))
+
+(define-public bazel-0.29
+ (package
+ (name "bazel")
+ (version "0.29.1")
+ (source (origin
+ (method url-fetch/zipbomb)
+ (uri (string-append "https://github.com/bazelbuild/bazel/"
+ "releases/download/" version
+ "/bazel-" version "-dist.zip"))
+ (sha256
+ (base32
+ "1rcd6xy61n07n7m6dgcw23275r8z3gkwmqdkd48nwrq8yb7m4al7"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'plop-vendored-tarballs
+ (lambda* (#:key inputs #:allow-other-keys)
+ (mkdir "distdir")
+ (copy-file (assoc-ref inputs "remotejdk11_linux")
+ "distdir/zulu11.2.3-jdk11.0.1-linux_x64.tar.gz")
+ #t))
+ (delete 'configure)
+ (add-before 'build 'pre-build
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (jdk (assoc-ref inputs "jdk"))
+ ;(HOME (string-append (getcwd) "/" ,name))
+ (HOME (getcwd))
+ (bazelrc (string-append HOME "/bazel-rc"))
+ (srcdeps (string-append HOME "/srcdeps"))
+ )
+ (setenv "HOME" HOME)
+ (with-output-to-file bazelrc
+ (lambda _
+ (format #t
+ "startup --server_javabase=~a~@
+ startup --batch~@
+ build --distdir=distdir~@
+ fetch --distdir=distdir~@
+ query --distdir=distdir~@
+ build --verbose_failure~@
+ build --color=yes~@
+ build --action_env=PATH=~a~@
+ build --action_env=PYTHON_LIB_PATH=~a~@
+ build --define=PREFIX=~a~@
+ build --host_javabase='@local_jdk//:jdk'~%"
+ jdk
+ (getenv "PATH") (getenv "PYTHONPATH") out)))
+
+ (define (append-to-bazelrc body)
+ (let ((file (open-file ".bazelrc" "a")))
+ (display body file)
+ (close-port file)))
+ (make-file-writable ".bazelrc")
+ (append-to-bazelrc "\n\n\n")
+ ;(append-to-bazelrc "startup --batch\n")
+ (append-to-bazelrc (string-append "startup --server_javabase=" (assoc-ref inputs "jdk") "\n"))
+ (append-to-bazelrc "build --distdir=distdir\n")
+ (append-to-bazelrc "fetch --distdir=distdir\n")
+ (append-to-bazelrc "query --distdir=distdir\n")
+ (append-to-bazelrc (string-append "build --override_repository=remotejdk11_linux=" (assoc-ref inputs "jdk11") "\n"))
+ (append-to-bazelrc "build --host_javabase='@local_jdk//:jdk\n")
+
+ (newline)
+ (invoke "tail" ".bazelrc")
+ (newline)
+ (newline)
+ (newline)
+ (invoke "cat" bazelrc)
+ (newline)
+
+ (substitute* ".bazelrc"
+ (("PREFIX=/usr") (string-append "PREFIX=" out)))
+
+ #t)))
+ (replace 'build
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (setenv "PROTOC" (string-append (assoc-ref inputs "protobuf")
+ "/bin/protoc"))
+ (invoke "sh" "compile.sh" "bootstrap")
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin")))
+ (install-file "output/bazel" bin)
+ #t)))
+ )))
+ (native-inputs
+ `(
+ ("jdk" ,icedtea-8 "jdk")
+ ("jdk11" ,openjdk11 "jdk")
+ ("protobuf" ,protobuf)
+ ("unzip" ,unzip)
+ ("python" ,python-2)
+ ("which" ,which)
+
+ ("remotejdk11_linux"
+ ,(origin
+ (method url-fetch)
+ (uri "https://mirror.bazel.build/openjdk/azul-zulu11.2.3-jdk11.0.1/zulu11.2.3-jdk11.0.1-linux_x64.tar.gz")
+ (sha256
+ (base32 "0x9anw7bbwp9yai4r1biwcrwcymycg1kqz1bb296xlph24siqar3"))))
+ ))
+ (home-page "https://bazel.build/")
+ (synopsis "Build and test software of any size, quickly and reliably")
+ (description "Bazel is a build tool that builds code quickly and reliably.
+It is used to build the majority of Google's software, and thus it has been
+designed to handle build problems present in Google's development environment.")
+ (license license:asl2.0)))
+
+(define-public bazel-0.4
+ (package
+ (name "bazel")
+ (version "0.4.5")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/bazelbuild/bazel")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "182r6ybajhkmkbcx2dq6p8cn2mym2lzd61h99vpx6whldrs1sqfs"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (add-before 'build 'pre-build
+ (lambda* (#:key inputs #:allow-other-keys)
+ (with-directory-excursion "third_party/grpc"
+ ;(invoke "ls" "-la")
+ ;(substitute* "compiler/src/java_plugin/cpp/java_generator.h"
+ ; (("iostream") "iostream.h"))
+ ;(apply invoke "gcc"
+ ; (list
+ ; "-o" "cpp_plugin"
+ ; ;"-Iinclude"
+ ; "-I."
+ ; "-Iinclude/grpc/include"
+ ; "-Iinclude/grpc"
+ ; (string-append "-I" (assoc-ref inputs "protobuf") "/include") "-pthread"
+ ; (string-append "-L" (assoc-ref inputs "protobuf") "/lib") "-lprotobuf-lite"
+ ; "src/compiler/config.h"
+ ; "src/compiler/cpp_generator.cc"
+ ; "src/compiler/cpp_generator.h"
+ ; "src/compiler/cpp_generator_helpers.h"
+ ; "src/compiler/cpp_plugin.cc"
+ ; "src/compiler/generator_helpers.h"
+ ; )
+ ; )
+
+ (apply invoke "gcc"
+ (cons*
+ "-w"
+ "-o" "grpc-java-plugin"
+ ;"-Iinclude"
+ ;(string-append "-I" (assoc-ref inputs "pybind11") "/include/pybind11")
+ ;(string-append "-I" (assoc-ref inputs "python") "/include/python2.7")
+ (string-append "-I" (assoc-ref inputs "protobuf") "/include") "-pthread"
+ (string-append "-L" (assoc-ref inputs "protobuf") "/lib") "-lprotobuf-lite"
+ (find-files "compiler/src/java_plugin/cpp")
+ ;(find-files "src/compiler")
+ )
+ )
+ )
+ #t))
+ (replace 'build
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (setenv "PROTOC" (string-append (assoc-ref inputs "protobuf")
+ "/bin/protoc"))
+ (setenv "GRPC_JAVA_PLUGIN" "third_party/grpc/grpc-java-plugin")
+ (invoke "ls" "-la" "third_party/grpc/")
+ (invoke "sh" "compile.sh" "bootstrap")
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin")))
+ (install-file "bazel" bin)
+ #t)))
+ )))
+ (native-inputs
+ `(
+ ;("boost" ,(@ (gnu packages boost) boost))
+ ("jdk" ,icedtea-8 "jdk")
+ ("protobuf" ,protobuf)
+ ("python" ,python-2)
+ ;("pybind11" ,(@ (gnu packages python-xyz) pybind11))
+ ("which" ,which)
+ ))
+ (home-page "https://bazel.build/")
+ (synopsis "Build and test software of any size, quickly and reliably")
+ (description "Bazel is a build tool that builds code quickly and reliably.
+It is used to build the majority of Google's software, and thus it has been
+designed to handle build problems present in Google's development environment.")
+ (license license:asl2.0)))
+
+(define-public bazel-0.3
+ (package
+ (name "bazel")
+ (version "0.3.2")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/bazelbuild/bazel")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "085cjz0qhm4a12jmhkjd9w3ic4a67035j01q111h387iklvgn6xg"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(
+ #:tests? #f
+ #:parallel-build? #f
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (replace 'build
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (setenv "PROTOC" (string-append (assoc-ref inputs "protobuf")
+ "/bin/protoc"))
+ (invoke "ls" "-la" "third_party/grpc/")
+ (setenv "GRPC_JAVA_PLUGIN" "third_party/grpc/protoc-gen-grpc-java-0.15.0-linux-x86_64.exe")
+ (invoke "sh" "compile.sh" "bootstrap")
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin")))
+ (install-file "bazel" bin)
+ #t)))
+ )))
+ (native-inputs
+ `(
+ ;("grpc-java" ,grpc-java)
+ ("jdk" ,icedtea-8 "jdk")
+ ("protobuf" ,protobuf)
+ ("python" ,python-2)
+ ("which" ,which)
+ ))
+ (home-page "https://bazel.build/")
+ (synopsis "Build and test software of any size, quickly and reliably")
+ (description "Bazel is a build tool that builds code quickly and reliably.
+It is used to build the majority of Google's software, and thus it has been
+designed to handle build problems present in Google's development environment.")
+ (license license:asl2.0)))
+
+(define-public bazel-0.2
+ (package
+ (name "bazel")
+ (version "0.2.3")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/bazelbuild/bazel")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "13mikylcnfpm79zxpc5g776vj83z441plm8sw8zr8cjgx3m1rkmf"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (replace 'build
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (setenv "PROTOC" (string-append (assoc-ref inputs "protobuf")
+ "/bin/protoc"))
+ (invoke "sh" "compile.sh" "bootstrap")
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin")))
+ (install-file "bazel" bin)
+ #t)))
+ )))
+ (native-inputs
+ `(
+ ("jdk" ,icedtea-8 "jdk")
+ ("protobuf" ,protobuf)
+ ("python" ,python-2)
+ ("which" ,which)
+ ))
+ (home-page "https://bazel.build/")
+ (synopsis "Build and test software of any size, quickly and reliably")
+ (description "Bazel is a build tool that builds code quickly and reliably.
+It is used to build the majority of Google's software, and thus it has been
+designed to handle build problems present in Google's development environment.")
+ (license license:asl2.0)))
+
+(define-public bazel-0.1
+ (package
+ (name "bazel")
+ (version "0.1.5")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/bazelbuild/bazel")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1xxin296x34phpdflnhsd1ckag2vl04srhywml4b4a4il496x9wl"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (replace 'build
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (setenv "PROTOC" (string-append (assoc-ref inputs "protobuf")
+ "/bin/protoc"))
+ (setenv "JAVA_HOME" (assoc-ref inputs "jdk"))
+ (invoke "sh" "compile.sh" "bootstrap")
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin")))
+ (install-file "bazel" bin)
+ #t)))
+ )))
+ (native-inputs
+ `(
+ ("jdk" ,icedtea-8 "jdk")
+ ("protobuf" ,protobuf)
+ ("python" ,python-2)
+ ("unzip" ,unzip)
+ ("which" ,which)
+ ))
+ (home-page "https://bazel.build/")
+ (synopsis "Build and test software of any size, quickly and reliably")
+ (description "Bazel is a build tool that builds code quickly and reliably.
+It is used to build the majority of Google's software, and thus it has been
+designed to handle build problems present in Google's development environment.")
+ (license license:asl2.0)))
+
+(define-public bazel-0.0
+ (let ((commit "d08b27fa9701fecfdb69e1b0d1ac2459efc2129b"))
+ (package
+ (name "bazel")
+ (version (git-version "0.0.0" "0" commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/bazelbuild/bazel")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0qj7iyb9ybcgfyn9m1kqm4q7r82ai8jsdgmdblwdhk4mdbxsyl2r"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (replace 'build
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (setenv "PROTOC" (string-append (assoc-ref inputs "protobuf")
+ "/bin/protoc"))
+ (setenv "JAVA_HOME" (assoc-ref inputs "jdk"))
+ (setenv "JNILIB" (string-append (assoc-ref inputs "libunix.so") "/lib/libunix.so"))
+ (invoke "sh" "compile.sh")
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin")))
+ (install-file "bazel" bin)
+ #t)))
+ )))
+ (native-inputs
+ `(
+ ("jdk" ,icedtea-8 "jdk")
+ ;("linux-libre-headers" ,(@ (gnu packages linux) linux-libre-headers))
+ ("libarchive" ,libarchive)
+ ("libunix.so" ,java-cisd-base-with-libs)
+ ("pkg-config" ,pkg-config)
+ ("protobuf" ,protobuf-2)
+ ;("python" ,python)
+ ("which" ,which)
+ ))
+ (home-page "https://bazel.build/")
+ (synopsis "Build and test software of any size, quickly and reliably")
+ (description "Bazel is a build tool that builds code quickly and reliably.
+It is used to build the majority of Google's software, and thus it has been
+designed to handle build problems present in Google's development environment.")
+ (license license:asl2.0))))
+
+(define java-cisd-base-with-libs
+ (package
+ (inherit java-cisd-base)
+ (arguments
+ (substitute-keyword-arguments (package-arguments java-cisd-base)
+ ((#:phases phases)
+ `(modify-phases ,phases
+ (add-after 'install 'install-shared-libs
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((lib (string-append (assoc-ref outputs "out") "/lib")))
+ (install-file "source/c/libunix.so" lib)
+ (install-file "source/c/libnativedata.so" lib)
+ #t)))))))))
+
+;(define grpc-java
+; (package
+; (inherit grpc)
+; (native-inputs
+; `(("jdk" ,icedtea-8 "jdk")
+; ,@(package-native-inputs grpc)))))
+
+(define-public grpc-java
+ (package
+ (name "grpc-java")
+ (version "1.26.0")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/grpc/grpc-java")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1m0wxd46ha4501078xp54dbshri4vmysv07qzaz85c63izw7yjva"))))
+ (build-system ant-build-system)
+ (arguments
+ `(#:tests? #f
+ #:jar-name "grpc.jar"
+ #:jdk ,openjdk9
+ #:source-dir "core/src/main"
+ ))
+ (native-inputs
+ `(
+ ("java-animal-sniffer" ,java-animal-sniffer)
+ ;("java-error-prone" ,java-error-prone)
+ ;; libgeronimo-annotation-1.3-spec-java
+ ;; libgoogle-auth-java
+ ;; libgoogle-common-protos-java
+ ;; libgoogle-gson-java
+ ;; libgoogle-perftools-dev
+ ;; libgradle-plugins-java
+ ("java-guava" ,java-guava-25)
+ ;; libjacoco-java
+ ("java-jsr305" ,java-jsr305)
+ ;; libopencensus-java
+ ;; libperfmark-java
+ ;; libprotobuf-java
+ ;; protobuf-compiler-grpc
+
+ ("java-protobuf" ,java-protobuf)
+ ("protobuf" ,protobuf)
+ ))
+ (home-page "https://github.com/grpc/grpc-java")
+ (synopsis "Java gRPC implementation")
+ (description "gRPC is a modern high performance @acronym{Remote Procedure
+Call, RPC} framework that can run in any environment. It can efficiently
+connect services in and across data centers with pluggable support for load
+balancing, tracing, health checking and authentication. It is also applicable
+in last mile of distributed computing to connect devices, mobile applications
+and browsers to backend services.")
+ (license license:asl2.0)))
diff --git a/gn/packages/tensorflow.scm b/gn/packages/tensorflow.scm
new file mode 100644
index 0000000..b20ad4f
--- /dev/null
+++ b/gn/packages/tensorflow.scm
@@ -0,0 +1,302 @@
+(define-module (gn packages tensorflow)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix utils)
+ #:use-module (guix packages)
+ #:use-module (guix download)
+ #:use-module (guix git-download)
+ #:use-module (guix build-system gnu)
+ #:use-module (gn packages bazel)
+ #:use-module (gnu packages assembly)
+ #:use-module (gnu packages base)
+ #:use-module (gnu packages commencement)
+ #:use-module (gnu packages compression)
+ #:use-module (gnu packages curl)
+ #:use-module (gnu packages databases)
+ #:use-module (gnu packages gcc)
+ #:use-module (gnu packages icu4c)
+ #:use-module (gnu packages image)
+ #:use-module (gnu packages maths)
+ #:use-module (gnu packages mpi)
+ #:use-module (gnu packages pcre)
+ #:use-module (gnu packages protobuf)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages python-xyz)
+ #:use-module (gnu packages rpc)
+ #:use-module (gnu packages regex)
+ #:use-module (gnu packages serialization)
+ #:use-module (gnu packages sqlite)
+ #:use-module (gnu packages version-control))
+
+(define-public tensorflow
+ (package
+ (name "tensorflow")
+ (version "2.4.0")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/tensorflow/tensorflow")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0yl06aypfxrcs35828xf04mkidz1x0j89v0q5h4d2xps1cb5rv3f"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(
+ #:tests? #f ; Worry about this later.
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (add-before 'build 'pre-build
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (jdk (assoc-ref inputs "jdk"))
+ (HOME (string-append (getcwd) "/" ,name))
+ (bazelrc (string-append HOME "/bazelrc"))
+ (srcdeps (string-append HOME "/srcdeps"))
+ )
+ (setenv "HOME" HOME)
+ (with-output-to-file bazelrc
+ (lambda _
+ (format #t
+ "startup --server_javabase=~a~@
+ startup --batch~@
+ build --define=-copt=\"-Wl,-rpath -Wl,~a/lib\"~@
+ build --color=yes~@
+ build --action_env=PATH=~a~@
+ build --action_env=PYTHON_LIB_PATH=~a~@
+ build --define=PREFIX=~a~@
+ build --host_javabase='@local_jdk//:jdk'~%"
+ jdk (assoc-ref inputs "gcc:lib") (getenv "PATH") (getenv "PYTHONPATH") out)))
+ (newline)
+ (invoke "cat" bazelrc)
+ (newline)
+
+ (substitute* ".bazelrc"
+ (("PREFIX=/usr") (string-append "PREFIX=" out)))
+
+ ;; Use the pre-downloaded files
+ (substitute* "WORKSPACE"
+ (("\\\".*github.com/bazelbuild/rules_closure/.*.tar.gz")
+ (string-append "\"file://" (assoc-ref inputs "io_bazel_rules_closure")))
+ )
+ (substitute* "third_party/toolchains/preconfig/generate/archives.bzl"
+ (("\\\".*github.com/bazelbuild/bazel-toolchains/.*.tar.gz")
+ (string-append "\"file://" (assoc-ref inputs "bazel_toolchains")))
+ )
+ (substitute* "tensorflow/workspace.bzl"
+ (("\\\".*github.com/bazelbuild/rules_swift/.*.tar.gz")
+ (string-append "\"file://" (assoc-ref inputs "build_bazel_rules_swift")))
+ (("\\\".*github.com/googleapis/googleapis/.*.zip")
+ (string-append "\"file://" (assoc-ref inputs "com_google_googleapis")))
+ (("\\\".*github.com/bazelbuild/bazel-skylib/.*.tar.gz")
+ (string-append "\"file://" (assoc-ref inputs "bazel_skylib")))
+ (("\\\".*github.com/bazelbuild/rules_cc/.*.zip")
+ (string-append "\"file://" (assoc-ref inputs "rules_cc")))
+ (("\\\".*github.com/bazelbuild/rules_android/.*.zip")
+ (string-append "\"file://" (assoc-ref inputs "build_bazel_rules_android")))
+ )
+
+ (substitute* "configure.py"
+ (("/usr/bin/ldd") (which "ldd")))
+
+ ;; Lets fix some hardcoded /usr/bins
+ ;(substitute* "third_party/toolchains/preconfig/generate/generate.bzl"
+ ; (("/usr/bin/python")
+ ; (string-append (dirname (or (which "python")
+ ; (which "python3")))
+ ; "/python"))
+ ; )
+
+ ;; cpu detection fails, hardcode Linux as OS.
+ ;(substitute* "third_party/gpus/cuda_configure.bzl"
+ ; ((".*Linux.*") " if True:\n"))
+ ;(substitute* "third_party/remote_config/common.bzl"
+ ; (("uname") (which "uname")))
+
+ ;(substitute* "third_party/remote_config/common.bzl"
+ ; ;(("\\\"which\\\"") (string-append "\"" (which "which") "\""))
+ ; (("python_bin_path =.*") (string-append "python_bin_path = \"" (which "python") "\"\n"))
+ ; )
+
+ ;; Copy sources to one directory
+ ;(mkdir-p srcdeps)
+ ;(for-each
+ ; (lambda (file)
+ ; (copy-recursively file (string-append srcdeps "/" (strip-store-file-name file))))
+ ; (list (assoc-ref inputs "io_bazel_rules_closure")))
+ #t)))
+ (replace 'build
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let* ((jdk (assoc-ref inputs "jdk"))
+ (HOME (string-append (getcwd) "/" ,name))
+ (bazelrc (string-append HOME "/bazelrc"))
+ (srcdeps (string-append HOME "/srcdeps"))
+ )
+ (setenv "TF_SYSTEM_LIBS" (string-append "absl_py,"
+ "astor_archive,"
+ "astunparse_archive,"
+ ;"boringssl,"
+ ;"com_github_googleapis_googleapis,"
+ ;"com_github_googlecloudplatform_google_cloud_cpp,"
+ "com_github_grpc_grpc,"
+ "com_google_protobuf,"
+ "com_googlesource_code_re2,"
+ "curl,"
+ "cython,"
+ "dill_archive,"
+ "double_conversion,"
+ ;"enum34_archive," ; python2 only?
+ "flatbuffers,"
+ ;"functools32_archive," ; python2 only?
+ "gast_archive,"
+ "gif,"
+ "hwloc,"
+ "icu,"
+ "jsoncpp_git,"
+ "libjpeg_turbo,"
+ "lmdb,"
+ "nasm,"
+ ;"nsync,"
+ ;"opt_einsum_archive,"
+ "org_sqlite,"
+ ;"pasta,"
+ "pcre,"
+ "png,"
+ "pybind11,"
+ "six_archive,"
+ "snappy,"
+ "tblib_archive,"
+ "termcolor_archive,"
+ "typing_extensions_archive,"
+ "wrapt,"
+ "zlib"))
+ (setenv "PYTHON_BIN_PATH" (which "python"))
+ (setenv "GCC_HOST_COMPILER_PATH" (string-append (assoc-ref inputs "gcc-toolchain") "/bin/gcc"))
+ (setenv "GCC_HOST_COMPILER_PREFIX" (string-append (assoc-ref inputs "gcc-toolchain") "/bin"))
+ ;(setenv "LD_LIBRARY_PATH" (string-append (assoc-ref inputs "gcc:lib") "/lib"))
+ (setenv "LD_LIBRARY_PATH" (string-append (assoc-ref inputs "gcc:lib")))
+ ;(invoke "python3" "configure.py")
+ (invoke "./configure")
+ ;(substitute* ".tf_configure.bazelrc"
+ ; (("PYTHON_LIB_PATH.*") (string-append "PYTHON_LIB_PATH=\"" (getenv "PYTHONPATH") "\"\n")))
+ (invoke "bazel"
+ (string-append "--bazelrc=" bazelrc)
+ "build"
+ ;"--config=opt"
+ "--config=avx_linux"
+ ;"//tensorflow:libtensorflow_cc.so"
+ "//tensorflow/tools/pip_package:build_pip_package"
+ ;"//tensorflow/tools/lib_package:libtensorflow"
+ )
+ )
+ ))
+ )
+ ))
+ (native-inputs
+ `(
+ ("bazel" ,bazel-bootstrap)
+ ("gcc:lib" ,gcc "lib")
+ ("gcc-toolchain" ,gcc-toolchain)
+ ("git" ,git)
+ ("python" ,python)
+ ("which" ,which)
+
+ ;; https://github.com/tensorflow/tensorflow/blob/master/third_party/systemlibs/syslibs_configure.bzl
+ ("absl_py" ,python-absl-py)
+ ("astor_archive" ,python-astor)
+ ("astunparse_archive" ,python-astunparse)
+ ("com_googlesource_code_re2" ,re2)
+ ("com_google_protobuf" ,protobuf)
+ ("com_github_grpc_grpc" ,grpc)
+ ("curl" ,curl)
+ ("cython" ,python-cython)
+ ("dill_archive" ,python-dill)
+ ("double-conversion" ,double-conversion)
+ ("flatbuffers" ,flatbuffers)
+ ("gast_archive" ,python-gast)
+ ("gif" ,giflib)
+ ("hwloc" ,hwloc)
+ ("icu" ,icu4c)
+ ("jsoncpp_git" ,jsoncpp)
+ ("libjpeg_turbo" ,libjpeg-turbo)
+ ("lmdb" ,lmdb)
+ ("nasm" ,nasm)
+ ("org_sqlite" ,sqlite)
+ ("pcre" ,pcre2)
+ ("png" ,libpng)
+ ("pybind11" ,pybind11)
+ ("six_archive" ,python-six)
+ ("snappy" ,snappy)
+ ("tblib_archive" ,python-tblib)
+ ("termcolor_archive" ,python-termcolor)
+ ("typing_extensions_archive" ,python-typing-extensions)
+ ("wrapt" ,python-wrapt)
+ ("zlib" ,zlib)
+
+ ("io_bazel_rules_closure"
+ ,(origin
+ (method url-fetch)
+ (uri "https://github.com/bazelbuild/rules_closure/archive/308b05b2419edb5c8ee0471b67a40403df940149.tar.gz")
+ (file-name "io_bazel_rules_closure.tar.gz")
+ (sha256
+ (base32
+ "1abbgk05f9flpv35zzw9fjjdvd3g1d8b0vbk0f2z4wfx10ykh02v"))))
+ ("bazel_toolchains"
+ ,(origin
+ (method url-fetch)
+ (uri "https://github.com/bazelbuild/bazel-toolchains/archive/92dd8a7a518a2fb7ba992d47c8b38299fe0be825.tar.gz")
+ (file-name "bazel_toolchains.tar.gz")
+ (sha256
+ (base32
+ "1xgyalc8pvy76rghkby28vz5y9ng1qhrqhn817vfwa1ny3wiis48"))))
+ ("build_bazel_rules_swift"
+ ,(origin
+ (method url-fetch)
+ (uri "https://github.com/bazelbuild/rules_swift/archive/3eeeb53cebda55b349d64c9fc144e18c5f7c0eb8.tar.gz")
+ (file-name "build_bazel_rules_swift.tar.gz")
+ (sha256
+ (base32
+ "11n8fmb5mf2zwgn202p8nmh82c8i1hm90pvajdks65yqvb33p0yh"))))
+ ("com_google_googleapis"
+ ,(origin
+ (method url-fetch)
+ (uri "https://github.com/googleapis/googleapis/archive/541b1ded4abadcc38e8178680b0677f65594ea6f.zip")
+ (file-name "com_google_googleapis.zip")
+ (sha256
+ (base32
+ "0059835rzfr9mb9x5m6ij7pi1y372qzdqls4a6vg8mf50qdv1fky"))))
+ ("bazel_skylib"
+ ,(origin
+ (method url-fetch)
+ (uri "https://github.com/bazelbuild/bazel-skylib/releases/download/0.9.0/bazel_skylib-0.9.0.tar.gz")
+ (file-name "bazel_skylib-0.9.0.tar.gz")
+ (sha256
+ (base32
+ "183w7h2cyzlq7q5q86yivzdwafyxvxc5dqii0yvksnhjj5a3dphx"))))
+ ("rules_cc"
+ ,(origin
+ (method url-fetch)
+ (uri "https://github.com/bazelbuild/rules_cc/archive/01d4a48911d5e7591ecb1c06d3b8af47fe872371.zip")
+ (file-name "rules_cc.zip")
+ (sha256
+ (base32
+ "1ybcjfwjykk7qii17dr640jivxssy1hb3x0hbd65bh461jlpcfyg"))))
+ ("build_bazel_rules_android"
+ ,(origin
+ (method url-fetch)
+ (uri "https://github.com/bazelbuild/rules_android/archive/v0.1.1.zip")
+ (file-name "build_bazel_rules_android.zip")
+ (sha256
+ (base32
+ "01kqga5xrkchw4kmr60r4m5xmy90zhxh1yb59mp94ndvv1fx21nd"))))
+ ))
+ (home-page "https://www.tensorflow.org/")
+ (synopsis "Machine learning framework")
+ (description "TensorFlow is a flexible platform for building and training
+machine learning models. It provides a library for high performance numerical
+computation and includes high level Python APIs, including both a sequential API
+for beginners that allows users to build models quickly by plugging together
+building blocks and a subclassing API with an imperative style for advanced
+research.")
+ (license license:asl2.0)))