Merge branch 'master' of gitlab.com:genenetwork/guix-bioinformatics

1 files changed, 0 insertions, 158 deletions

diff --git a/gn/packages/clFFT.scm b/gn/packages/clFFT.scm
deleted file mode 100644
index fb42c85..0000000
--- a/gn/packages/clFFT.scm
+++ /dev/null
@@ -1,158 +0,0 @@
-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2016 Dennis Mungai <dmngaie@gmail.com>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
-
-(define-module (gn packages clFFT)
-  #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix download)
-  #:use-module (guix git-download)
-  #:use-module (guix build-system gnu)
-  #:use-module (guix build-system cmake)
-  #:use-module (guix packages)
-  #:use-module (gnu packages algebra)
-  #:use-module (gnu packages bootstrap)
-  #:use-module (gnu packages base)
-  #:use-module (gnu packages autotools)
-  #:use-module (gnu packages compression)
-  #:use-module (gnu packages curl)
-  #:use-module (gnu packages gawk)
-  #:use-module (gnu packages cmake)
-  #:use-module (gnu packages boost)
-  #:use-module (gnu packages glib)
-  #:use-module (gnu packages image)
-  #:use-module (gnu packages video)
-  #:use-module (gnu packages textutils)
-  #:use-module (gnu packages gl)
-  #:use-module (gnu packages gnupg)
-  #:use-module (gnu packages pkg-config)
-  #:use-module (gnu packages maths)
-  #:use-module (gnu packages mpi)
-  #:use-module (gnu packages ruby)
-  #:use-module (gnu packages web)
-  #:use-module (gnu packages python)
-  #:use-module (gnu packages xorg)
-  #:use-module (gnu packages version-control)
-  #:use-module (gnu packages linux))
-
-(define-public clFFT
-  (package
-    (name "clFFT")
-    (version "v2.10.1")
-    (source (origin
-             (method url-fetch)
-             (uri (string-append "https://github.com/clMathLibraries/clFFT/archive/"
-                                 version ".tar.gz"))
-             (sha256
-              (base32
-               "19hrk1lf06kch8x9dpbdj0waycn2mldrmj2y4vzi7zn2gdfw6g73"))))
-    (build-system cmake-build-system)
-    (arguments `(#:configure-flags '("../clFFT-2.10.1/src" "-DBUILD_SHARED_LIBS=ON" "-DCMAKE_BUILD_TYPE=Release") #:tests? #f))
-    (native-inputs `(("autoconf" ,autoconf)
-        ("automake" ,automake)
-        ("cmake" ,cmake)
-        ("libtool" ,libtool)
-        ("pkg-config" ,pkg-config)))
-    (inputs `(("curl" ,curl)
-       ("dbus" ,dbus)
-       ("enca" ,enca)
-       ("eudev" ,eudev)
-       ("fftw-openmpi" ,fftw-openmpi)
-       ("glew" ,glew)
-       ("libcap" ,libcap)
-       ("libjpeg" ,libjpeg)
-       ("libltdl" ,libltdl)
-       ("libtiff" ,libtiff)
-       ("mesa-utils" ,mesa-utils)
-       ("openmpi" ,openmpi)
-       ("ocl-icd" ,ocl-icd)
-       ("opencl-headers" ,opencl-headers)
-       ("randrproto" ,randrproto)
-       ("libxrandr" ,libxrandr)
-       ("xineramaproto" ,xineramaproto)
-       ("libxinerama" ,libxinerama)
-       ("libxcursor" ,libxcursor)
-       ("python" ,python-2)))
-    (home-page "http://www.glfw.org/")
-    (synopsis "glfw is an Open Source, multi-platform library for creating windows with OpenGL contexts and receiving input and events.")
-    (description "glfw is an Open Source, multi-platform library for creating windows with OpenGL contexts and receiving input and events.")
-    (license (list license:gpl2))))
-
-(define-public ocl-icd
-  (package
-   (name "ocl-icd")
-   (version "2.2.9")
-   (source (origin
-             (method url-fetch)
-             (uri (string-append "https://forge.imag.fr/frs/download.php/716/ocl-icd-"
-                                 version ".tar.gz"))
-             (file-name (string-append name "-" version ".tar.gz"))
-             (sha256
-              (base32
-               "1rgaixwnxmrq2aq4kcdvs0yx7i6krakarya9vqs7qwsv5hzc32hc"))))
-    (inputs `(("zip" ,zip)
-             ("autoconf" ,autoconf)
-             ("automake" ,automake)
-             ("ruby" ,ruby)
-             ("libtool" ,libtool)
-             ("opencl-headers" ,opencl-headers)
-             ("libgcrypt" ,libgcrypt)))
-    (build-system gnu-build-system)
-     (arguments
-     '(#:phases (modify-phases %standard-phases
-                    (add-after 'unpack `bootstrap
-                      (lambda _
-                        (zero? (system* "autoreconf" "-vfi")))))))
-    (home-page "https://forge.imag.fr/projects/ocl-icd/")
-    (synopsis "OpenCL implementations are provided as ICD (Installable Client Driver).")
-    (description "OpenCL implementations are provided as ICD (Installable Client Driver).
-    An OpenCL program can use several ICD thanks to the use of an ICD Loader as provided by this project.
-    This free ICD Loader can load any (free or non free) ICD")
-    (license (list license:gpl2 license:ruby))))
-
-(define-public opencl-headers
-(let ((commit "c1770dc"))
-  (package
-    (name "opencl-headers")
-    (version (string-append "2.1-" commit ))
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-              (url "https://github.com/KhronosGroup/OpenCL-Headers.git")
-              (commit commit)))
-              (file-name (string-append name "-" commit))
-              (sha256
-               (base32
-                "0m9fkblqja0686i2jjqiszvq3df95gp01a2674xknlmkd6525rck"))))
-    (propagated-inputs '())
-    (inputs '())
-    (native-inputs '())
-    (build-system gnu-build-system)
-    (arguments
-     '(#:phases
-       (modify-phases %standard-phases
-         (delete 'configure)
-         (delete 'build)
-         (delete 'check)
-         (replace 'install
-                  (lambda* (#:key outputs #:allow-other-keys)
-                    (copy-recursively "." (string-append
-                                                 (assoc-ref outputs "out")
-                                                 "/include/CL")))))))
-    (synopsis "The Khronos OpenCL headers")
-    (description "This package provides the Khronos OpenCL headers")
-    (home-page "https://www.khronos.org/registry/cl/")
-    (license (list license:gpl2)))))