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    <p>Welcome to the <strong>GeneNetwork Data Quality Control and Upload System</strong>. This system is provided to help in uploading your data onto GeneNetwork where you can do analysis on it.</p>

    <p>The sections below provide an overview of what features the menu items on
      the left provide to you. Please peruse the information to get a good
      big-picture understanding of what the system provides you and how to get
      the most out of it.</p>

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    <h2>Species</h2>

    <p>The GeneNetwork service provides datasets and tools for doing genetic
      studies &mdash; from
      <a href="{{gn2server_intro}}"
         target="_blank"
         title="GeneNetwork introduction — opens in a new tab.">
        its introduction</a>:

      <blockquote class="blockquote">
        <p>GeneNetwork is a group of linked data sets and tools used to study
          complex networks of genes, molecules, and higher order gene function
          and phenotypes. &hellip;</p>
      </blockquote>
    </p>

    <p>With this in mind, it follows that the data in the system is centered
      aroud a variety of species. The <strong>species section</strong> will
      list the currently available species in the system, and give you the
      ability to add new ones, if the one you want to work on does not currently
      exist on GeneNetwork</p>

    <h2>Populations</h2>

    <p>Your studies will probably focus on a particular subset of the entire
      species you are interested in &ndash; your population.</p>
    <p>Populations are a way to organise the species data so as to link data to
      specific know populations for a particular species, e.g. The BXD
      population of mice (Mus musculus)</p>
    <p>In older GeneNetwork documentation, you might run into the term
      <em>InbredSet</em>. Should you run into it, it is a term that we've
      deprecated that essentially just means the population.</p>

    <h2>Samples</h2>

    <p>These are the samples or individuals (sometimes cases) that were involved
      in the experiment, and from whom the data was derived.</p>

    <h2>Genotype Data</h2>

    <p>This section will allow you to view and upload the genetic markers for
      your species, and the genotype encodings used for your particular
      population.</p>
    <p>While, technically, genetic markers relate to the species in general, and
      not to a particular population, the data (allele information) itself
      relates to the particular population it was generated from &ndash;
      specifically, to the actual individuals used in the experiment.</p>
    <p>This is the reason why the genotype data information comes under the
      population, and will check for the prior existence of the related
      samples/individuals before attempting an upload of your data.</p>

    <h2>Expression Data</h2>

    <p class="text-danger">
      <span class="glyphicon glyphicon-exclamation-sign"></span>
      <strong>TODO</strong>: Document this &hellip;</p>

    <h2>Phenotype Data</h2>

    <p class="text-danger">
      <span class="glyphicon glyphicon-exclamation-sign"></span>
      <strong>TODO</strong>: Document this &hellip;</p>

    <h2>Individual Data</h2>

    <p class="text-danger">
      <span class="glyphicon glyphicon-exclamation-sign"></span>
      <strong>TODO</strong>: Document this &hellip;</p>

    <h2>RNA-Seq Data</h2>

    <p class="text-danger">
      <span class="glyphicon glyphicon-exclamation-sign"></span>
      <strong>TODO</strong>: Document this &hellip;</p>
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