"""Endpoints for publications"""
import json

from gn_libs.mysqldb import database_connection
from flask import (
    flash,
    request,
    url_for,
    redirect,
    Blueprint,
    render_template,
    current_app as app)

from uploader.authorisation import require_login

from .models import (
    fetch_publications,
    fetch_publication_by_id,
    create_new_publications,
    fetch_publication_phenotypes)

from gn_libs.debug import __pk__

pubbp = Blueprint("publications", __name__)


@pubbp.route("/", methods=["GET"])
@require_login
def index():
    """Index page for publications."""
    with database_connection(app.config["SQL_URI"]) as conn:
        return render_template("publications/index.html")


@pubbp.route("/list", methods=["GET"])
@require_login
def list_publications():
    with database_connection(app.config["SQL_URI"]) as conn:
        return json.dumps({
            "publications": tuple({
                **row, "index": idx
            } for idx,row in enumerate(
                fetch_publications(conn), start=1)),
            "status": "success"
        })


@pubbp.route("/view/<int:publication_id>", methods=["GET"])
@require_login
def view_publication(publication_id: int):
    """View more details on a particular publication."""
    with database_connection(app.config["SQL_URI"]) as conn:
        return render_template(
            "publications/view-publication.html",
            publication=fetch_publication_by_id(conn, publication_id),
            linked_phenotypes=tuple(fetch_publication_phenotypes(
                conn, publication_id)))


@pubbp.route("/create", methods=["GET", "POST"])
@require_login
def create_publication():
    """Create a new publication."""
    if(request.method == "GET"):
        return render_template("publications/create-publication.html")
    form = request.form
    authors = form.get("publication-authors").encode("utf8")
    if authors is None or authors == "":
        flash("The publication's author(s) MUST be provided!", "alert alert-danger")
        return redirect(url_for("publications.create", **request.args))

    with database_connection(app.config["SQL_URI"]) as conn:
        publications = create_new_publications(conn, ({
            "pubmed_id": form.get("pubmed-id"),
            "abstract": form.get("publication-abstract").encode("utf8") or None,
            "authors": authors,
            "title":  form.get("publication-title").encode("utf8") or None,
            "journal": form.get("publication-journal").encode("utf8") or None,
            "volume": form.get("publication-volume").encode("utf8") or None,
            "pages": form.get("publication-pages").encode("utf8") or None,
            "month": (form.get("publication-month") or "").encode("utf8").capitalize() or None,
            "year": form.get("publication-year").encode("utf8") or None
        },))
        flash("New publication created!", "alert alert-success")
        return redirect(url_for(
            request.args.get("return-to") or "publications.view_publication",
            publication_id=publications[0]["publication_id"],
            **request.args))

    flash("Publication creation failed!", "alert alert-danger")
    app.logger.debug("Failed to create the new publication.", exc_info=True)
    return redirect(url_for("publications.create_publication"))