"""Test accessing nonexistent member.""" from pathlib import Path import pytest from zipfile import ZipFile from r_qtl import r_qtl2 as rqtl2 @pytest.mark.unit_test @pytest.mark.parametrize( "filepath,memberkey", (("tests/r_qtl/test_files/nonexistent.zip", "geno"), ("tests/r_qtl/test_files/nonexistent.zip", "founder_geno"), ("tests/r_qtl/test_files/nonexistent.zip", "pheno"), ("tests/r_qtl/test_files/nonexistent.zip", "covar"), ("tests/r_qtl/test_files/nonexistent.zip", "phenocovar"), ("tests/r_qtl/test_files/nonexistent.zip", "gmap"), ("tests/r_qtl/test_files/nonexistent.zip", "pmap"))) def test_loading_nonexistent_file(filepath, memberkey): """ GIVEN: A zipfile with a valid control file, but some files mentioned in the control file do not exist in the zipfile WHEN: access is made to such missing files THEN: raise an exception """ with (ZipFile(Path(filepath).absolute(), "r") as zfile, pytest.raises(rqtl2.InvalidFormat)): cdata = rqtl2.control_data(zfile) tuple(rqtl2.file_data(zfile, memberkey, cdata))