From 9af24c595d9db7660e1917164f6a304adbe31392 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Fri, 13 Dec 2024 13:19:56 -0600
Subject: Prompt for file structure details.

---
 .../templates/phenotypes/add-phenotypes-base.html  |  2 +
 .../phenotypes/add-phenotypes-raw-files.html       | 77 +++++++++++++++++++++-
 2 files changed, 78 insertions(+), 1 deletion(-)

(limited to 'uploader/templates')

diff --git a/uploader/templates/phenotypes/add-phenotypes-base.html b/uploader/templates/phenotypes/add-phenotypes-base.html
index 7de3fc8..b3a53b0 100644
--- a/uploader/templates/phenotypes/add-phenotypes-base.html
+++ b/uploader/templates/phenotypes/add-phenotypes-base.html
@@ -311,4 +311,6 @@
       return false;
   });
 </script>
+
+{%block more_javascript%}{%endblock%}
 {%endblock%}
diff --git a/uploader/templates/phenotypes/add-phenotypes-raw-files.html b/uploader/templates/phenotypes/add-phenotypes-raw-files.html
index a5fa161..30dc10b 100644
--- a/uploader/templates/phenotypes/add-phenotypes-raw-files.html
+++ b/uploader/templates/phenotypes/add-phenotypes-raw-files.html
@@ -25,10 +25,85 @@
 {%endblock%}
 
 {%block frm_add_phenotypes_elements%}
-<strong>Raw files elements go here &hellip;</strong>
+<fieldset id="fldset-file-metadata">
+  <legend>File(s) Metadata</legend>
+  <div class="form-group">
+    <label for="txt-file-separator" class="form-label">File Separator</label>
+    <div class="input-group">
+      <input id="txt-file-separator"
+             name="file-separator"
+             type="text"
+             value="&#9;"
+             class="form-control"
+             maxlength="1" />
+      <span class="input-group-btn">
+        <button id="btn-reset-file-separator" class="btn btn-info">Reset Default</button>
+      </span>
+    </div>
+    <span class="form-text text-muted">
+      Provide the character that separates the fields in your file(s). It should
+      be the same character for all files (if more than one is provided).<br />
+      A tab character will be assumed if you leave this field blank.</span>
+  </div>
+
+  <div class="form-group">
+    <label for="txt-file-comment-character" class="form-label">File Comment-Character</label>
+    <div class="input-group">
+      <input id="txt-file-comment-character"
+             name="file-comment-character"
+             type="text"
+             value="#"
+             class="form-control"
+             maxlength="1" />
+      <span class="input-group-btn">
+        <button id="btn-reset-file-comment-character" class="btn btn-info">
+          Reset Default</button>
+      </span>
+    </div>
+    <span class="form-text text-muted">
+      This specifies that lines that begin with the character provided will be
+      considered comment lines and ignored in their entirety.</span>
+  </div>
+
+  <div class="form-group">
+    <label for="txt-file-na" class="form-label">File "No-Value" Indicators</label>
+    <div class="input-group">
+      <input id="txt-file-na"
+             name="file-na"
+             type="text"
+             value="- NA N/A"
+             class="form-control" />
+      <span class="input-group-btn">
+        <button id="btn-reset-file-na" class="btn btn-info">Reset Default</button>
+      </span>
+    </div>
+    <span class="form-text text-muted">
+      This specifies strings in your file indicate that there is no value for a
+      particular cell (a cell is where a column and row intersect). Provide a
+      space-separated list of strings if you have more than one way of
+      indicating no values.</span>
+  </div>
+</fieldset>
 {%endblock%}
 
 
 {%block page_documentation%}
 page documentation goes here!!!
+
+
+{%block more_javascript%}
+<script type="text/javascript">
+  $("#btn-reset-file-separator").on("click", (event) => {
+      event.preventDefault();
+      $("#txt-file-separator").val("\t");
+  });
+  $("#btn-reset-file-comment-character").on("click", (event) => {
+      event.preventDefault();
+      $("#txt-file-comment-character").val("#");
+  });
+  $("#btn-reset-file-na").on("click", (event) => {
+      event.preventDefault();
+      $("#txt-file-na").val("- NA N/A");
+  });
+</script>
 {%endblock%}
-- 
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