From 480ee0b657b762f1dd0b1164f98ab13bc9a11f56 Mon Sep 17 00:00:00 2001 From: Frederick Muriuki Muriithi Date: Mon, 23 Sep 2024 16:29:25 -0500 Subject: Initialise "Platforms" section. --- uploader/templates/platforms/base.html | 13 +++ uploader/templates/platforms/create-platform.html | 103 ++++++++++++++++++++++ uploader/templates/platforms/index.html | 21 +++++ uploader/templates/platforms/list-platforms.html | 93 +++++++++++++++++++ 4 files changed, 230 insertions(+) create mode 100644 uploader/templates/platforms/base.html create mode 100644 uploader/templates/platforms/create-platform.html create mode 100644 uploader/templates/platforms/index.html create mode 100644 uploader/templates/platforms/list-platforms.html (limited to 'uploader/templates') diff --git a/uploader/templates/platforms/base.html b/uploader/templates/platforms/base.html new file mode 100644 index 0000000..dac965f --- /dev/null +++ b/uploader/templates/platforms/base.html @@ -0,0 +1,13 @@ +{%extends "species/base.html"%} + +{%block lvl3_breadcrumbs%} +
  • + + Sequencing Platforms +
    • +{%block lvl4_breadcrumbs%}{%endblock%} +{%endblock%} diff --git a/uploader/templates/platforms/create-platform.html b/uploader/templates/platforms/create-platform.html new file mode 100644 index 0000000..b5961ce --- /dev/null +++ b/uploader/templates/platforms/create-platform.html @@ -0,0 +1,103 @@ +{%extends "platforms/base.html"%} +{%from "flash_messages.html" import flash_all_messages%} +{%from "species/macro-display-species-card.html" import display_species_card%} + +{%block title%}Platforms — Create Platforms{%endblock%} + +{%block pagetitle%}Platforms — Create Platforms{%endblock%} + +{%block lvl3_breadcrumbs%} +
  • + create platform +
    • +{%endblock%} + +{%block contents%} +{{flash_all_messages()}} + +
    +

    Create New Platform

    + +

    You can create a new genetic sequencing platform below.

    +
    + +
    +
    + +
    + + + +

    This is the platform's + + accession value on NCBI. If you do not know the value, click the + link and search on NCBI for species '{{species.FullName}}'.

     +
    + +
    + + + +

    This is name of the genetic sequencing platform.

     +
    + +
    + + + +

    Use the following conventions for this field: +

      +
    1. Start with a 4-letter vendor code, e.g. "Affy" for "Affymetrix", "Illu" for "Illumina", etc.
      2. +
    2. Append an underscore to the 4-letter vendor code
      3. +
    3. Use the name of the array given by the vendor, e.g. U74AV2, MOE430A, etc.
      4. +
    +

    +     +
    + +
    + + + +

    The full platform title. Sometimes, this is the same as the Platform + Name above.

     +
    + +
    + +
    +
    +
    +{%endblock%} + +{%block sidebarcontents%} +{{display_species_card(species)}} +{%endblock%} diff --git a/uploader/templates/platforms/index.html b/uploader/templates/platforms/index.html new file mode 100644 index 0000000..35b6464 --- /dev/null +++ b/uploader/templates/platforms/index.html @@ -0,0 +1,21 @@ +{%extends "platforms/base.html"%} +{%from "flash_messages.html" import flash_all_messages%} +{%from "species/macro-select-species.html" import select_species_form%} + +{%block title%}Platforms{%endblock%} + +{%block pagetitle%}Platforms{%endblock%} + + +{%block contents%} +{{flash_all_messages()}} + +
    +

    In this section, you will be able to view and manage the sequencing + platforms that are currently supported by GeneNetwork.

    +
    + +
    + {{select_species_form(url_for("species.platforms.index"), species)}} +
    +{%endblock%} diff --git a/uploader/templates/platforms/list-platforms.html b/uploader/templates/platforms/list-platforms.html new file mode 100644 index 0000000..718dd1d --- /dev/null +++ b/uploader/templates/platforms/list-platforms.html @@ -0,0 +1,93 @@ +{%extends "platforms/base.html"%} +{%from "flash_messages.html" import flash_all_messages%} +{%from "species/macro-display-species-card.html" import display_species_card%} + +{%block title%}Platforms — List Platforms{%endblock%} + +{%block pagetitle%}Platforms — List Platforms{%endblock%} + + +{%block contents%} +{{flash_all_messages()}} + +
    +

    View the list of the genetic sequencing platforms that are currently + supported by GeneNetwork.

    +

    If you cannot find the platform you wish to use, you can add it by clicking + the "New Platform" button below.

    +

    Create Platform

    +
    + +
    +

    Supported Platforms

    + {%if platforms is defined and platforms | length > 0%} +

    There are {{total_platforms}} platforms supported by GeneNetwork

    + +
    +
    + {%if start_from > 0%} + + + Previous + + {%endif%} +
    +
    + Displaying platforms {{start_from+1}} to {{start_from+count if start_from+count < total_platforms else total_platforms}} of + {{total_platforms}} +
    +
    + {%if start_from + count < total_platforms%} + + Next + + + {%endif%} +
    +
    + + + + + + + + + + + + + {%for platform in platforms%} + + + + + + + {%endfor%} + +
    #Platform NameGEO PlatformTitle
    {{platform.sequence_number}}{{platform.GeneChipName}}{{platform.GeoPlatform}}{{platform.Title}}
    + {%else%} +

    + + There are no platforms supported at this time!

    + {%endif%} +
    +{%endblock%} + +{%block sidebarcontents%} +{{display_species_card(species)}} +{%endblock%} -- cgit v1.2.3