From b40f14bb409d54fda957e2d8269f1bc86bd34e58 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 29 Dec 2025 11:42:58 -0600
Subject: Samples: Move feature to new UI templates.

---
 uploader/templates/samples/upload-samples.html | 81 ++++++++++++--------------
 1 file changed, 37 insertions(+), 44 deletions(-)

(limited to 'uploader/templates/samples/upload-samples.html')

diff --git a/uploader/templates/samples/upload-samples.html b/uploader/templates/samples/upload-samples.html
index 4aa2f7f..1f665a3 100644
--- a/uploader/templates/samples/upload-samples.html
+++ b/uploader/templates/samples/upload-samples.html
@@ -1,56 +1,22 @@
 {%extends "samples/base.html"%}
 {%from "flash_messages.html" import flash_all_messages%}
-{%from "populations/macro-select-population.html" import select_population_form%}
-{%from "populations/macro-display-population-card.html" import display_population_card%}
 
 {%block title%}Samples — Upload Samples{%endblock%}
 
-{%block pagetitle%}Samples — Upload Samples{%endblock%}
-
-{%block lvl4_breadcrumbs%}
-<li {%if activelink=="uploade-samples"%}
-    class="breadcrumb-item active"
-    {%else%}
-    class="breadcrumb-item"
-    {%endif%}>
+{%block breadcrumbs%}
+{{super()}}
+<li class="breadcrumb-item">
   <a href="{{url_for('species.populations.samples.upload_samples',
-           species_id=species.SpeciesId,
-           population_id=population.Id)}}">List</a>
+           species_id=species['SpeciesId'],
+           population_id=population.Id)}}">
+    Upload
+  </a>
 </li>
 {%endblock%}
 
 {%block contents%}
 {{flash_all_messages()}}
 
-<div class="row">
-  <p>
-    You can now upload the samples for the "{{population.FullName}}" population
-    from the "{{species.FullName}}" species here.
-  </p>
-  <p>
-    Upload a <strong>character-separated value (CSV)</strong> file that contains
-    details about your samples. The CSV file should have the following fields:
-    <dl>
-      <dt>Name</dt>
-      <dd>The primary name/identifier for the sample/individual.</dd>
-
-      <dt>Name2</dt>
-      <dd>A secondary name for the sample. This can simply be the same as
-        <strong>Name</strong> above. This field <strong>MUST</strong> contain a
-        value.</dd>
-
-      <dt>Symbol</dt>
-      <dd>A symbol for the sample. This can be a strain name, e.g. 'BXD60' for
-        species that have strains. This field can be left empty for species like
-        Humans that do not have strains..</dd>
-
-      <dt>Alias</dt>
-      <dd>An alias for the sample. Can be an empty field, or take on the same
-        value as that of the Symbol.</dd>
-    </dl>
-  </p>
-</div>
-
 <div class="row">
   <form id="form-samples"
         method="POST"
@@ -68,6 +34,9 @@
       <input type="file" name="samples_file" id="file-samples"
 	     accept="text/csv, text/tab-separated-values, text/plain"
 	     class="form-control" />
+      <small class="form-text text-muted">
+        See the <a href="#docs-samples-upload">documentation below</a> for
+        details on expected file format.</small>
     </div>
 
     <div class="form-group">
@@ -149,10 +118,34 @@
     </tbody>
   </table>
 </div>
-{%endblock%}
 
-{%block sidebarcontents%}
-{{display_population_card(species, population)}}
+
+
+<div class="row" id="docs-samples-upload">
+  <h3 class="subheading">File Format</h3>
+  <p>
+    Upload a <strong>character-separated value (CSV)</strong> file that contains
+    details about your samples. The CSV file should have the following fields:
+    <dl>
+      <dt>Name</dt>
+      <dd>The primary name/identifier for the sample/individual.</dd>
+
+      <dt>Name2</dt>
+      <dd>A secondary name for the sample. This can simply be the same as
+        <strong>Name</strong> above. This field <strong>MUST</strong> contain a
+        value.</dd>
+
+      <dt>Symbol</dt>
+      <dd>A symbol for the sample. This can be a strain name, e.g. 'BXD60' for
+        species that have strains. This field can be left empty for species like
+        Humans that do not have strains..</dd>
+
+      <dt>Alias</dt>
+      <dd>An alias for the sample. Can be an empty field, or take on the same
+        value as that of the Symbol.</dd>
+    </dl>
+  </p>
+</div>
 {%endblock%}
 
 {%block javascript%}
-- 
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