From 9cd33ddac3d6848c5443962d66494635feadef51 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 9 Sep 2024 14:06:31 -0500
Subject: Initialise samples uploads

* Move existing code to new module
* Rework the UI: create new templates
* Rework the routes: Select species and populations before attempting
  an upload.
---
 uploader/templates/samples/upload-samples.html | 139 -------------------------
 1 file changed, 139 deletions(-)
 delete mode 100644 uploader/templates/samples/upload-samples.html

(limited to 'uploader/templates/samples/upload-samples.html')

diff --git a/uploader/templates/samples/upload-samples.html b/uploader/templates/samples/upload-samples.html
deleted file mode 100644
index e62de57..0000000
--- a/uploader/templates/samples/upload-samples.html
+++ /dev/null
@@ -1,139 +0,0 @@
-{%extends "base.html"%}
-{%from "flash_messages.html" import flash_messages%}
-
-{%block title%}Upload Samples{%endblock%}
-
-{%block css%}{%endblock%}
-
-{%block contents%}
-<h1 class="heading">upload samples</h1>
-
-{{flash_messages("alert-success")}}
-
-<p>You can now upload a character-separated value (CSV) file that contains
-  details about your samples. The CSV file should have the following fields:
-  <dl>
-    <dt>Name</dt>
-    <dd>The primary name for the sample</dd>
-
-    <dt>Name2</dt>
-    <dd>A secondary name for the sample. This can simply be the same as
-      <strong>Name</strong> above. This field <strong>MUST</strong> contain a
-      value.</dd>
-
-    <dt>Symbol</dt>
-    <dd>A symbol for the sample. Can be an empty field.</dd>
-
-    <dt>Alias</dt>
-    <dd>An alias for the sample. Can be an empty field.</dd>
-  </dl>
-</p>
-
-<form id="form-samples"
-      method="POST"
-      action="{{url_for('samples.upload_samples',
-              species_id=species.SpeciesId,
-              population_id=population.InbredSetId)}}"
-      enctype="multipart/form-data">
-  <legend class="heading">upload samples</legend>
-
-  <div class="form-group">
-    <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
-    <label class="form-label">species:</label>
-    <span class="form-text">{{species.SpeciesName}} [{{species.MenuName}}]</span>
-  </div>
-
-  <div class="form-group">
-    <input type="hidden" name="inbredset_id" value="{{population.InbredSetId}}" />
-    <label class="form-label">grouping/population:</label>
-    <span class="form-text">{{population.Name}} [{{population.FullName}}]</span>
-  </div>
-
-  <div class="form-group">
-    <label for="file-samples" class="form-label">select file</label>
-    <input type="file" name="samples_file" id="file:samples"
-	   accept="text/csv, text/tab-separated-values"
-	   class="form-control" />
-  </div>
-
-  <div class="form-group">
-    <label for="select:separator" class="form-label">field separator</label>
-    <select id="select:separator"
-	    name="separator"
-	    required="required"
-	    class="form-control">
-      <option value="">Select separator for your file: (default is comma)</option>
-      <option value="&#x0009;">TAB</option>
-      <option value="&#x0020;">Space</option>
-      <option value=",">Comma</option>
-      <option value=";">Semicolon</option>
-      <option value="other">Other</option>
-    </select>
-    <input id="txt:separator"
-	   type="text"
-	   name="other_separator"
-	   class="form-control" />
-    <small class="form-text text-muted">
-      If you select '<strong>Other</strong>' for the field separator value,
-      enter the character that separates the fields in your CSV file in the form
-      field below.
-    </small>
-  </div>
-
-  <div class="form-group form-check">
-    <input id="chk:heading"
-	   type="checkbox"
-	   name="first_line_heading"
-	   class="form-check-input" />
-    <label for="chk:heading" class="form-check-label">
-      first line is a heading?</label>
-    <small class="form-text text-muted">
-      Select this if the first line in your file contains headings for the
-      columns.
-    </small>
-  </div>
-
-  <div class="form-group">
-    <label for="txt:delimiter" class="form-label">field delimiter</label>
-    <input id="txt:delimiter"
-	   type="text"
-	   name="field_delimiter"
-	   maxlength="1"
-	   class="form-control" />
-    <small class="form-text text-muted">
-      If there is a character delimiting the string texts within particular
-      fields in your CSV, provide the character here. This can be left blank if
-      no such delimiters exist in your file.
-    </small>
-  </div>
-
-  <button type="submit"
-	  class="btn btn-primary">upload samples file</button>
-</form>
-
-<table id="tbl:samples-preview" class="table">
-  <caption class="heading">preview content</caption>
-
-  <thead>
-    <tr>
-      <th>Name</th>
-      <th>Name2</th>
-      <th>Symbol</th>
-      <th>Alias</th>
-    </tr>
-  </thead>
-
-  <tbody>
-    <tr id="default-row">
-      <td colspan="4">
-	Please make some selections to preview the data.</td>
-    </tr>
-  </tbody>
-</table>
-
-{%endblock%}
-
-
-{%block javascript%}
-<script src="/static/js/upload_samples.js" type="text/javascript"></script>
-{%endblock%}
-- 
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