From 754e8f214b940e05298cb360ed829f5c685d55a5 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Thu, 25 Jul 2024 11:07:33 -0500
Subject: Rename module: qc_app --> uploader

---
 uploader/templates/rqtl2/select-population.html | 136 ++++++++++++++++++++++++
 1 file changed, 136 insertions(+)
 create mode 100644 uploader/templates/rqtl2/select-population.html

(limited to 'uploader/templates/rqtl2/select-population.html')

diff --git a/uploader/templates/rqtl2/select-population.html b/uploader/templates/rqtl2/select-population.html
new file mode 100644
index 0000000..37731f0
--- /dev/null
+++ b/uploader/templates/rqtl2/select-population.html
@@ -0,0 +1,136 @@
+{%extends "base.html"%}
+{%from "flash_messages.html" import flash_messages%}
+
+{%block title%}Select Grouping/Population{%endblock%}
+
+{%block contents%}
+<h1 class="heading">Select grouping/population</h1>
+
+<div class="explainer">
+  <p>The data is organised in a hierarchical form, beginning with
+    <em>species</em> at the very top. Under <em>species</em> the data is
+    organised by <em>population</em>, sometimes referred to as <em>grouping</em>.
+    (In some really old documents/systems, you might see this referred to as
+    <em>InbredSet</em>.)</p>
+  <p>In this section, you get to define what population your data is to be
+    organised by.</p>
+</div>
+
+<form method="POST"
+      action="{{url_for('upload.rqtl2.select_population', species_id=species.SpeciesId)}}">
+  <legend class="heading">select grouping/population</legend>
+  {{flash_messages("error-select-population")}}
+
+  <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+
+  <div class="form-group">
+    <label for="select:inbredset" class="form-label">population</label>
+    <select id="select:inbredset"
+	    name="inbredset_id"
+	    required="required"
+	    class="form-control">
+      <option value="">Select a grouping/population</option>
+      {%for pop in populations%}
+      <option value="{{pop.InbredSetId}}">
+	{{pop.InbredSetName}} ({{pop.FullName}})</option>
+      {%endfor%}
+    </select>
+    <span class="form-text text-muted">If you are adding data to an already existing
+      population, simply pick the population from this drop-down selector. If
+      you cannot find your population from this list, try the form below to
+      create a new one..</span>
+  </div>
+
+  <button type="submit" class="btn btn-primary" />select population</button>
+</form>
+
+<p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p>
+
+<form method="POST"
+      action="{{url_for('upload.rqtl2.create_population', species_id=species.SpeciesId)}}">
+  <legend class="heading">create new grouping/population</legend>
+  {{flash_messages("error-create-population")}}
+
+  <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+
+  <div class="form-group">
+    <legend class="heading">mandatory</legend>
+
+    <div class="form-group">
+      <label for="txt:inbredset-name" class="form-label">name</label>
+      <input id="txt:inbredset-name"
+	     name="inbredset_name"
+	     type="text"
+	     required="required"
+	     maxlength="30"
+	     placeholder="Enter grouping/population name"
+	     class="form-control" />
+      <span class="form-text text-muted">This is a short name that identifies the
+        population. Useful for menus, and quick scanning.</span>
+    </div>
+
+    <div class="form-group">
+      <label for="txt:" class="form-label">full name</label>
+      <input id="txt:inbredset-fullname"
+	     name="inbredset_fullname"
+	     type="text"
+	     required="required"
+	     maxlength="100"
+	     placeholder="Enter the grouping/population's full name"
+	     class="form-control" />
+      <span class="form-text text-muted">This can be the same as the name above, or can
+        be longer. Useful for documentation, and human communication.</span>
+    </div>
+  </div>
+
+  <div class="form-group">
+    <legend class="heading">optional</legend>
+
+    <div class="form-group">
+      <label for="num:public" class="form-label">public?</label>
+      <select id="num:public"
+	      name="public"
+	      class="form-control">
+        <option value="0">0 - Only accessible to authorised users</option>
+        <option value="1">1 - Publicly accessible to all users</option>
+        <option value="2" selected>
+	  2 - Publicly accessible to all users</option>
+      </select>
+      <span class="form-text text-muted">This determines whether the
+        population/grouping will appear on the menus for users.</span>
+    </div>
+
+    <div class="form-group">
+      <label for="txt:inbredset-family" class="form-label">family</label>
+      <input id="txt:inbredset-family"
+	     name="inbredset_family"
+	     type="text"
+	     placeholder="I am not sure what this is about."
+	     class="form-control" />
+      <span class="form-text text-muted">I do not currently know what this is about.
+        This is a failure on my part to figure out what this is and provide a
+        useful description. Please feel free to remind me.</span>
+    </div>
+
+    <div class="form-group">
+    <label for="txtarea:" class="form-label">Description</label>
+    <textarea id="txtarea:description"
+	      name="description"
+	      rows="5"
+	      placeholder="Enter a description of this grouping/population"
+	      class="form-control"></textarea>
+    <span class="form-text text-muted">
+      A long-form description of what the population consists of. Useful for
+      humans.</span>
+    </div>
+  </div>
+
+  <button type="submit" class="btn btn-primary" />
+  create grouping/population</button>
+</form>
+
+{%endblock%}
+
+
+{%block javascript%}
+{%endblock%}
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