From 4285cc10e24d6410206329ba079406e9aa21cc30 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 23 Sep 2024 14:30:15 -0500
Subject: Move R/qtl2 upload code under the populations package.

---
 .../templates/populations/rqtl2/summary-info.html  | 65 ++++++++++++++++++++++
 1 file changed, 65 insertions(+)
 create mode 100644 uploader/templates/populations/rqtl2/summary-info.html

(limited to 'uploader/templates/populations/rqtl2/summary-info.html')

diff --git a/uploader/templates/populations/rqtl2/summary-info.html b/uploader/templates/populations/rqtl2/summary-info.html
new file mode 100644
index 0000000..0adba2e
--- /dev/null
+++ b/uploader/templates/populations/rqtl2/summary-info.html
@@ -0,0 +1,65 @@
+{%extends "base.html"%}
+{%from "flash_messages.html" import flash_messages%}
+
+{%block title%}Upload R/qtl2 Bundle{%endblock%}
+
+{%block contents%}
+<h2 class="heading">Summary</h2>
+
+<div class="row">
+  <p>This is the information you have provided to accompany the R/qtl2 bundle
+    you have uploaded. Please verify the information is correct before
+    proceeding.</p>
+</div>
+
+<div class="row">
+  <dl>
+    <dt>Species</dt>
+    <dd>{{species.SpeciesName}} ({{species.FullName}})</dd>
+
+    <dt>Population</dt>
+    <dd>{{population.InbredSetName}}</dd>
+
+    {%if geno_dataset%}
+    <dt>Genotype Dataset</dt>
+    <dd>{{geno_dataset.Name}} ({{geno_dataset.FullName}})</dd>
+    {%endif%}
+
+    {%if tissue%}
+    <dt>Tissue</dt>
+    <dd>{{tissue.TissueName}} ({{tissue.Name}}, {{tissue.Short_Name}})</dd>
+    {%endif%}
+
+    {%if probe_study%}
+    <dt>ProbeSet Study</dt>
+    <dd>{{probe_study.Name}} ({{probe_study.FullName}})</dd>
+    {%endif%}
+
+    {%if probe_dataset%}
+    <dt>ProbeSet Dataset</dt>
+    <dd>{{probe_dataset.Name2}} ({{probe_dataset.FullName}})</dd>
+    {%endif%}
+  </dl>
+</div>
+
+<div class="row">
+  <form id="frm:confirm-rqtl2bundle-details"
+        action="{{url_for('expression-data.rqtl2.confirm_bundle_details',
+	        species_id=species.SpeciesId,
+	        population_id=population.InbredSetId)}}"
+        method="POST"
+        enctype="multipart/form-data">
+    <legend class="heading">Create ProbeSet dataset</legend>
+
+    <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+    <input type="hidden" name="population_id"
+	   value="{{population.InbredSetId}}" />
+    <input type="hidden" name="rqtl2_bundle_file" value="{{rqtl2_bundle_file}}" />
+    <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
+    <input type="hidden" name="probe-study-id" value="{{probe_study.Id}}" />
+    <input type="hidden" name="probe-dataset-id" value="{{probe_dataset.Id}}" />
+
+    <button type="submit" class="btn btn-primary">continue</button>
+  </form>
+</div>
+{%endblock%}
-- 
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