From 4285cc10e24d6410206329ba079406e9aa21cc30 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 23 Sep 2024 14:30:15 -0500
Subject: Move R/qtl2 upload code under the populations package.

---
 .../populations/rqtl2/select-population.html       | 57 ++++++++++++++++++++++
 1 file changed, 57 insertions(+)
 create mode 100644 uploader/templates/populations/rqtl2/select-population.html

(limited to 'uploader/templates/populations/rqtl2/select-population.html')

diff --git a/uploader/templates/populations/rqtl2/select-population.html b/uploader/templates/populations/rqtl2/select-population.html
new file mode 100644
index 0000000..ded425f
--- /dev/null
+++ b/uploader/templates/populations/rqtl2/select-population.html
@@ -0,0 +1,57 @@
+{%extends "expression-data/index.html"%}
+{%from "flash_messages.html" import flash_messages%}
+{%from "species/macro-display-species-card.html" import display_species_card%}
+
+{%block title%}Select Grouping/Population{%endblock%}
+
+{%block contents%}
+<h1 class="heading">Select grouping/population</h1>
+
+<div class="row">
+  <p>The data is organised in a hierarchical form, beginning with
+    <em>species</em> at the very top. Under <em>species</em> the data is
+    organised by <em>population</em>, sometimes referred to as <em>grouping</em>.
+    (In some really old documents/systems, you might see this referred to as
+    <em>InbredSet</em>.)</p>
+  <p>In this section, you get to define what population your data is to be
+    organised by.</p>
+</div>
+
+<div class="row">
+  <form method="POST"
+        action="{{url_for('expression-data.rqtl2.select_population',
+                species_id=species.SpeciesId)}}">
+    <legend class="heading">select grouping/population</legend>
+    {{flash_messages("error-select-population")}}
+
+    <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+
+    <div class="form-group">
+      <label for="select:inbredset" class="form-label">population</label>
+      <select id="select:inbredset"
+	      name="inbredset_id"
+	      required="required"
+	      class="form-control">
+        <option value="">Select a grouping/population</option>
+        {%for pop in populations%}
+        <option value="{{pop.InbredSetId}}">
+	  {{pop.InbredSetName}} ({{pop.FullName}})</option>
+        {%endfor%}
+      </select>
+      <span class="form-text text-muted">Select the population for your data from
+        the list below.</span>
+    </div>
+
+    <button type="submit" class="btn btn-primary" />select population</button>
+</form>
+</div>
+
+{%endblock%}
+
+{%block sidebarcontents%}
+{{display_species_card(species)}}
+{%endblock%}
+
+
+{%block javascript%}
+{%endblock%}
-- 
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