From 4c0186d281ff77b28fa1abe1f84da0e8cb72dea1 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 7 Oct 2024 13:32:01 -0500
Subject: Create new phenotype dataset (PublishFreeze).

Provide the UI and code to create a new phenotype dataset.
---
 uploader/templates/phenotypes/create-dataset.html | 106 ++++++++++++++++++++++
 uploader/templates/phenotypes/list-datasets.html  |   6 +-
 2 files changed, 110 insertions(+), 2 deletions(-)
 create mode 100644 uploader/templates/phenotypes/create-dataset.html

(limited to 'uploader/templates/phenotypes')

diff --git a/uploader/templates/phenotypes/create-dataset.html b/uploader/templates/phenotypes/create-dataset.html
new file mode 100644
index 0000000..93de92f
--- /dev/null
+++ b/uploader/templates/phenotypes/create-dataset.html
@@ -0,0 +1,106 @@
+{%extends "phenotypes/base.html"%}
+{%from "flash_messages.html" import flash_all_messages%}
+{%from "macro-table-pagination.html" import table_pagination%}
+{%from "populations/macro-display-population-card.html" import display_population_card%}
+
+{%block title%}Phenotypes{%endblock%}
+
+{%block pagetitle%}Phenotypes{%endblock%}
+
+{%block lvl4_breadcrumbs%}
+<li {%if activelink=="create-dataset"%}
+    class="breadcrumb-item active"
+    {%else%}
+    class="breadcrumb-item"
+    {%endif%}>
+  <a href="{{url_for('species.populations.phenotypes.create_dataset',
+           species_id=species.SpeciesId,
+           population_id=population.Id)}}">Create Datasets</a>
+</li>
+{%endblock%}
+
+{%block contents%}
+{{flash_all_messages()}}
+
+<div class="row">
+  <p>Create a new phenotype dataset.</p>
+</div>
+
+<div class="row">
+  <form id="frm-create-pheno-dataset"
+        action="{{url_for('species.populations.phenotypes.create_dataset',
+                species_id=species.SpeciesId,
+                population_id=population.Id)}}"
+        method="POST">
+
+    <div class="form-group">
+      <label class="form-label" for="txt-dataset-name">Name</label>
+      {%if errors["dataset-name"] is defined%}
+      <small class="form-text text-muted danger">
+        <p>{{errors["dataset-name"]}}</p></small>
+      {%endif%}
+      <input type="text"
+             name="dataset-name"
+             id="txt-dataset-name"
+             value="{{original_formdata.get('dataset-name') or (population.InbredSetCode + 'Publish')}}"
+             {%if errors["dataset-name"] is defined%}
+             class="form-control danger"
+             {%else%}
+             class="form-control"
+             {%endif%}
+             required="required" />
+      <small class="form-text text-muted">
+        <p>A short representative name for the dataset.</p>
+        <p>Recommended: Use the population code and append "Publish" at the end.
+          <br />This field will only accept names composed of
+          letters ('A-Za-z'), numbers (0-9), hyphens and underscores.</p>
+      </small>
+    </div>
+
+    <div class="form-group">
+      <label class="form-label" for="txt-dataset-fullname">Full Name</label>
+      {%if errors["dataset-fullname"] is defined%}
+      <small class="form-text text-muted danger">
+        <p>{{errors["dataset-fullname"]}}</p></small>
+      {%endif%}
+      <input id="txt-dataset-fullname"
+             name="dataset-fullname"
+             type="text"
+             value="{{original_formdata.get('dataset-fullname', '')}}"
+             {%if errors["dataset-fullname"] is defined%}
+             class="form-control danger"
+             {%else%}
+             class="form-control"
+             {%endif%}
+             required="required" />
+      <small class="form-text text-muted">
+        <p>A longer, descriptive name for the dataset &mdash; useful for humans.
+      </p></small>
+    </div>
+
+    <div class="form-group">
+      <label class="form-label" for="txt-dataset-shortname">Short Name</label>
+      <input id="txt-dataset-shortname"
+             name="dataset-shortname"
+             type="text"
+             class="form-control"
+             value="{{original_formdata.get('dataset-shortname') or (population.InbredSetCode + ' Publish')}}" />
+      <small class="form-text text-muted">
+        <p>An optional, short name for the dataset. <br />
+          If this is not provided, it will default to the value provided for the
+          <strong>Name</strong> field above.</p></small>
+    </div>
+
+    <div class="form-group">
+      <input type="submit"
+             class="btn btn-primary"
+             value="create phenotype dataset"  />
+    </div>
+
+  </form>
+</div>
+{%endblock%}
+
+{%block sidebarcontents%}
+{{display_population_card(species, population)}}
+{%endblock%}
diff --git a/uploader/templates/phenotypes/list-datasets.html b/uploader/templates/phenotypes/list-datasets.html
index 360fd2c..2eaf43a 100644
--- a/uploader/templates/phenotypes/list-datasets.html
+++ b/uploader/templates/phenotypes/list-datasets.html
@@ -51,8 +51,10 @@
   <p class="text-warning">
     <span class="glyphicon glyphicon-exclamation-sign"></span>
     There is no dataset for this population!</p>
-  <p><a href="#"
-        class="not-implemented btn btn-primary"
+  <p><a href="{{url_for('species.populations.phenotypes.create_dataset',
+              species_id=species.SpeciesId,
+              population_id=population.Id)}}"
+        class="btn btn-primary"
         title="Create a new phenotype dataset.">create dataset</a></p>
   {%endif%}
 </div>
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