From eecc17d9c7b79a31eed40ed72df9dc06eec9056d Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 13 Oct 2025 12:01:18 -0500
Subject: Publications: Enable editing publication details.

---
 uploader/publications/views.py | 40 ++++++++++++++++++++++++++++++++++++++++
 1 file changed, 40 insertions(+)

(limited to 'uploader/publications/views.py')

diff --git a/uploader/publications/views.py b/uploader/publications/views.py
index a88f754..23efa2e 100644
--- a/uploader/publications/views.py
+++ b/uploader/publications/views.py
@@ -14,6 +14,7 @@ from flask import (
 from uploader.authorisation import require_login
 
 from .models import (
+    update_publications,
     fetch_publication_by_id,
     create_new_publications,
     fetch_publication_phenotypes)
@@ -102,3 +103,42 @@ def create_publication():
     flash("Publication creation failed!", "alert alert-danger")
     app.logger.debug("Failed to create the new publication.", exc_info=True)
     return redirect(url_for("publications.create_publication"))
+
+
+@pubbp.route("/edit/<int:publication_id>", methods=["GET", "POST"])
+@require_login
+def edit_publication(publication_id: int):
+    """Edit a publication's details."""
+    with database_connection(app.config["SQL_URI"]) as conn:
+        if request.method == "GET":
+            return render_template(
+                "publications/edit-publication.html",
+                publication=fetch_publication_by_id(conn, publication_id),
+                linked_phenotypes=tuple(fetch_publication_phenotypes(
+                    conn, publication_id)),
+                publication_id=publication_id)
+
+        form = request.form
+        _pub = update_publications(conn, ({
+            "publication_id": publication_id,
+            "pubmed_id": form.get("pubmed-id") or None,
+            "abstract": form.get("publication-abstract").encode("utf8") or None,
+            "authors": form.get("publication-authors").encode("utf8"),
+            "title":  form.get("publication-title").encode("utf8") or None,
+            "journal": form.get("publication-journal").encode("utf8") or None,
+            "volume": form.get("publication-volume").encode("utf8") or None,
+            "pages": form.get("publication-pages").encode("utf8") or None,
+            "month": (form.get("publication-month") or "").encode("utf8").capitalize() or None,
+            "year": form.get("publication-year").encode("utf8") or None
+        },))
+
+        if not _pub:
+            flash("There was an error updating the publication details.",
+                  "alert-danger")
+            return redirect(url_for(
+                "publications.edit_publication", publication_id=publication_id))
+
+        flash("Successfully updated the publication details.",
+              "alert-success")
+        return redirect(url_for(
+            "publications.view_publication", publication_id=publication_id))
-- 
cgit 1.4.1