From 8a84c4d6762446e5fdf9f9121f539c89419ae6a0 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Fri, 22 Nov 2024 12:16:28 -0600
Subject: Use gn-libs code for db connection.

Use the code in gn-libs to connect to the database, rather than a
local module.
---
 uploader/population/rqtl2.py | 3 ++-
 uploader/population/views.py | 2 +-
 2 files changed, 3 insertions(+), 2 deletions(-)

(limited to 'uploader/population')

diff --git a/uploader/population/rqtl2.py b/uploader/population/rqtl2.py
index 9968bd6..436eca0 100644
--- a/uploader/population/rqtl2.py
+++ b/uploader/population/rqtl2.py
@@ -12,6 +12,7 @@ import MySQLdb as mdb
 from redis import Redis
 from MySQLdb.cursors import DictCursor
 from werkzeug.utils import secure_filename
+from gn_libs.mysqldb import database_connection
 from flask import (
     flash,
     escape,
@@ -29,7 +30,7 @@ from r_qtl import r_qtl2
 from uploader import jobs
 from uploader.files import save_file, fullpath
 from uploader.species.models import all_species
-from uploader.db_utils import with_db_connection, database_connection
+from uploader.db_utils import with_db_connection
 
 from uploader.authorisation import require_login
 from uploader.platforms.models import platform_by_id, platforms_by_species
diff --git a/uploader/population/views.py b/uploader/population/views.py
index 36201ba..4f985f5 100644
--- a/uploader/population/views.py
+++ b/uploader/population/views.py
@@ -3,6 +3,7 @@ import json
 import base64
 
 from MySQLdb.cursors import DictCursor
+from gn_libs.mysqldb import database_connection
 from flask import (flash,
                    request,
                    url_for,
@@ -15,7 +16,6 @@ from uploader.oauth2.client import oauth2_post
 from uploader.ui import make_template_renderer
 from uploader.authorisation import require_login
 from uploader.genotypes.views import genotypesbp
-from uploader.db_utils import database_connection
 from uploader.datautils import enumerate_sequence
 from uploader.phenotypes.views import phenotypesbp
 from uploader.expression_data.views import exprdatabp
-- 
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