From 66e7970c3ff5305f8a7d6d60d34b974389f8fe78 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 18 Sep 2024 17:10:50 -0500
Subject: Separate genetic markers from encodings and datasets

---
 uploader/genotypes/views.py | 27 ++++++++++++++++++++++-----
 1 file changed, 22 insertions(+), 5 deletions(-)

(limited to 'uploader/genotypes')

diff --git a/uploader/genotypes/views.py b/uploader/genotypes/views.py
index 0618949..2ff9965 100644
--- a/uploader/genotypes/views.py
+++ b/uploader/genotypes/views.py
@@ -90,6 +90,26 @@ def list_genotypes(species_id: int, population_id: int):
                 "species.populations.genotypes.select_population",
                 species_id=species_id))
 
+        return render_template("genotypes/list-genotypes.html",
+                               species=species,
+                               population=population,
+                               genocode=genocode_by_population(
+                                   conn, population_id),
+                               total_markers=genotype_markers_count(
+                                   conn, species_id),
+                               activelink="list-genotypes")
+
+
+@genotypesbp.route("/<int:species_id>/genotypes/list-markers", methods=["GET"])
+@require_login
+def list_markers(species_id: int):
+    """List a species' genetic markers."""
+    with database_connection(app.config["SQL_URI"]) as conn:
+        species = species_by_id(conn, species_id)
+        if not bool(species):
+            flash("Invalid species provided!", "alert-danger")
+            return redirect(url_for("species.populations.genotypes.index"))
+
         start_from = safe_int(request.args.get("start_from") or 0)
         if start_from < 0:
             start_from = 0
@@ -97,14 +117,11 @@ def list_genotypes(species_id: int, population_id: int):
         markers = enumerate_sequence(
             genotype_markers(conn, species_id, offset=start_from, limit=count),
             start=start_from+1)
-        return render_template("genotypes/list-genotypes.html",
+        return render_template("genotypes/list-markers.html",
                                species=species,
-                               population=population,
-                               genocode=genocode_by_population(
-                                   conn, population_id),
                                total_markers=genotype_markers_count(
                                    conn, species_id),
                                start_from=start_from,
                                count=count,
                                markers=markers,
-                               activelink="list-genotypes")
+                               activelink="list-markers")
-- 
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