From e49b4367f1dab1c3acb3cd5d71ba09359c5ab4ee Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Thu, 29 Aug 2024 15:21:27 -0500
Subject: Initialise package for dealing with Species.

---
 uploader/expression_data/index.py   | 2 +-
 uploader/expression_data/rqtl2.py   | 1 +
 uploader/expression_data/samples.py | 1 +
 3 files changed, 3 insertions(+), 1 deletion(-)

(limited to 'uploader/expression_data')

diff --git a/uploader/expression_data/index.py b/uploader/expression_data/index.py
index 799989e..db23136 100644
--- a/uploader/expression_data/index.py
+++ b/uploader/expression_data/index.py
@@ -14,7 +14,7 @@ from flask import (
     render_template,
     current_app as app)
 
-from uploader.db import species
+from uploader.species.models import all_species as species
 from uploader.authorisation import require_login
 from uploader.db_utils import with_db_connection
 
diff --git a/uploader/expression_data/rqtl2.py b/uploader/expression_data/rqtl2.py
index 48df66c..975fc1f 100644
--- a/uploader/expression_data/rqtl2.py
+++ b/uploader/expression_data/rqtl2.py
@@ -41,6 +41,7 @@ from uploader.db import (
     save_population,
     populations_by_species,
     population_by_species_and_id,)
+from uploader.species.models import species_by_id
 from uploader.db.datasets import (
     geno_dataset_by_id,
     geno_datasets_by_species_and_population,
diff --git a/uploader/expression_data/samples.py b/uploader/expression_data/samples.py
index 95b9b73..0715d14 100644
--- a/uploader/expression_data/samples.py
+++ b/uploader/expression_data/samples.py
@@ -34,6 +34,7 @@ from uploader.db import (
     population_by_id,
     populations_by_species,
     species as fetch_species)
+from uploader.species.models import species_by_id, all_species as fetch_species
 
 samples = Blueprint("samples", __name__)
 
-- 
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