From 3e51fb24fd34bab2164a5f4056bc78d21827ca29 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 3 Jan 2024 16:53:40 +0300
Subject: Use generic parser. Remove obsoleted functions.

---
 tests/r_qtl/test_r_qtl2_geno.py | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

(limited to 'tests/r_qtl/test_r_qtl2_geno.py')

diff --git a/tests/r_qtl/test_r_qtl2_geno.py b/tests/r_qtl/test_r_qtl2_geno.py
index 787d13a..c33984e 100644
--- a/tests/r_qtl/test_r_qtl2_geno.py
+++ b/tests/r_qtl/test_r_qtl2_geno.py
@@ -171,8 +171,12 @@ def test_parse_geno_files(relpath, expected):
     THEN: ensure that the data we get is as expected
     """
     with ZipFile(Path(relpath).absolute(), "r") as zfile:
-        assert tuple(
-            rqtl2.genotype_data(zfile, rqtl2.control_data(zfile))) == expected
+        cdata = rqtl2.control_data(zfile)
+        assert tuple(rqtl2.file_data(
+            zfile,
+            "geno",
+            cdata,
+            *rqtl2.make_process_data_geno(cdata))) == expected
 
 @pytest.mark.unit_test
 @pytest.mark.parametrize(
-- 
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