From e3a62548c816f5348e4d91a6328783a73d1ecbf0 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Thu, 17 Oct 2024 14:37:26 -0500
Subject: Cleanup: Delete all extracted files after processing.
---
scripts/rqtl2/phenotypes_qc.py | 4 ++++
1 file changed, 4 insertions(+)
(limited to 'scripts')
diff --git a/scripts/rqtl2/phenotypes_qc.py b/scripts/rqtl2/phenotypes_qc.py
index b2b02ed..76ef7bf 100644
--- a/scripts/rqtl2/phenotypes_qc.py
+++ b/scripts/rqtl2/phenotypes_qc.py
@@ -1,5 +1,6 @@
"""Run quality control on phenotypes-specific files in the bundle."""
import sys
+import shutil
import tempfile
from pathlib import Path
from zipfile import ZipFile
@@ -167,6 +168,9 @@ def run_qc(# pylint: disable=[too-many-arguments]
# - Check the 3 checks above for phenose and phenonum values too
# qc_phenose_files(…)
# qc_phenonum_files(…)
+
+ # - Delete all extracted files
+ shutil.rmtree(extractiondir)
raise NotImplementedError("WIP!")
--
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