From 5eddcada30e8d6bbc4631103ae3fd96bdc6b134b Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Fri, 11 Apr 2025 14:59:49 -0500
Subject: Move code to fetch phenotype publications from DB to publications
 package.

---
 scripts/phenotypes_bulk_edit.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

(limited to 'scripts')

diff --git a/scripts/phenotypes_bulk_edit.py b/scripts/phenotypes_bulk_edit.py
index 488805c..4888924 100644
--- a/scripts/phenotypes_bulk_edit.py
+++ b/scripts/phenotypes_bulk_edit.py
@@ -13,6 +13,7 @@ from MySQLdb.cursors import DictCursor
 from gn_libs import jobs, mysqldb, sqlite3
 
 import uploader.publications.pubmed as pmed
+from uploader.publications.models import fetch_phenotype_publications
 logging.basicConfig(
     format="%(asctime)s — %(filename)s:%(lineno)s — %(levelname)s: %(message)s")
 logger = logging.getLogger(__name__)
@@ -163,7 +164,7 @@ def compute_differences(
     pub_diff = publications_differences(
         conn,
         file_contents,
-        __fetch_publications__(conn, pheno_xref_ids),
+        fetch_phenotype_publications(conn, pheno_xref_ids),
         pubmed_ids)
     logger.debug("Publications diff: %s", pub_diff)
     # 2. Data differences
-- 
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