From 5a8f1d5368e6a4119cd73955c0d0ede0f98cce42 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 15 Apr 2026 14:48:41 -0500
Subject: Pull helper function out of main().

---
 scripts/load_phenotypes_to_db.py | 31 ++++++++++++++++++-------------
 1 file changed, 18 insertions(+), 13 deletions(-)

(limited to 'scripts')

diff --git a/scripts/load_phenotypes_to_db.py b/scripts/load_phenotypes_to_db.py
index 9b70fed..fedb9f8 100644
--- a/scripts/load_phenotypes_to_db.py
+++ b/scripts/load_phenotypes_to_db.py
@@ -459,6 +459,24 @@ if __name__ == "__main__":
         logging.getLogger("uploader.phenotypes.models").setLevel(log_level)
 
 
+    def __parse_resource_details__(meta) -> dict:
+        """Parse out details regarding the wrapper resource from the metadata."""
+        _key_mappings_ = {
+            # allow both 'data_*' and 'data*' for the metadata.
+            "data_description": "description",
+            "datadescription": "description"
+        }
+        return {
+            "resource_name": meta.get(# at least one of these MUST be set.
+                "dataname",
+                meta["data_name"]),
+            "resource_metadata": {
+                rkey: meta[mkey]
+                for mkey, rkey in _key_mappings_.items() if mkey in meta
+            }
+        }
+
+
     def main():
         """Entry-point for this script."""
         args = parse_args()
@@ -515,19 +533,6 @@ if __name__ == "__main__":
         logger.info("Updating authorisation.")
         _job_metadata = job["metadata"]
 
-        def __parse_resource_details__(meta) -> dict:
-            _key_mappings_ = {
-                "data_description": "description",
-            }
-            return {
-                "resource_name": _job_metadata["dataname"],
-                "resource_metadata": {
-                    rkey: meta[mkey]
-                    for mkey, rkey in _key_mappings_.items()
-                    if mkey in meta
-                }
-            }
-
         return update_auth((_job_metadata["authserver"],
                             _job_metadata["token"]),
                            __parse_resource_details__(_job_metadata),
-- 
cgit 1.4.1