From 51b349d6acf11b2807b191c2b8e50d4315eb69b0 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Fri, 22 Mar 2024 06:56:16 +0300
Subject: Map names in files to names in database.
---
scripts/insert_data.py | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
(limited to 'scripts')
diff --git a/scripts/insert_data.py b/scripts/insert_data.py
index efe81df..a60426a 100644
--- a/scripts/insert_data.py
+++ b/scripts/insert_data.py
@@ -280,8 +280,11 @@ def insert_se(# pylint: disable = [too-many-arguments]
file=sys.stderr)
return 1
+ namemappings = {
+ _key[0:_key.find("::RAND_")]: _key for _key in annotations.keys()
+ }
se_values = (
- {"DataId": annotations[str(item["ProbeSetName"])]["DataId"], **item}
+ {"DataId": annotations[namemappings[str(item["ProbeSetName"])]]["DataId"], **item}
for item in (
row for psrows in
read_datavalues(filepath, headings, strains).values()
--
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