From 8a84c4d6762446e5fdf9f9121f539c89419ae6a0 Mon Sep 17 00:00:00 2001 From: Frederick Muriuki Muriithi Date: Fri, 22 Nov 2024 12:16:28 -0600 Subject: Use gn-libs code for db connection. Use the code in gn-libs to connect to the database, rather than a local module. --- scripts/validate_file.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'scripts/validate_file.py') diff --git a/scripts/validate_file.py b/scripts/validate_file.py index a40d7e7..52e55ec 100644 --- a/scripts/validate_file.py +++ b/scripts/validate_file.py @@ -8,12 +8,12 @@ from zipfile import ZipFile, is_zipfile import jsonpickle from redis import Redis from redis.exceptions import ConnectionError # pylint: disable=[redefined-builtin] +from gn_libs.mysqldb import database_connection from quality_control.utils import make_progress_calculator from quality_control.parsing import FileType, strain_names, collect_errors from uploader import jobs -from uploader.db_utils import database_connection from .cli_parser import init_cli_parser from .qc import add_file_validation_arguments -- cgit 1.4.1