From b0991ec5cea1411237b82e92467603bf9da803f5 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Tue, 17 Jun 2025 14:18:24 -0500
Subject: Allow users to provide transposed files.

---
 scripts/rqtl2/phenotypes_qc.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'scripts/rqtl2/phenotypes_qc.py')

diff --git a/scripts/rqtl2/phenotypes_qc.py b/scripts/rqtl2/phenotypes_qc.py
index 699c291..5c89ca0 100644
--- a/scripts/rqtl2/phenotypes_qc.py
+++ b/scripts/rqtl2/phenotypes_qc.py
@@ -209,12 +209,12 @@ def qc_phenocovar_file(
                     (f"Record {_lc} in file {filepath.name} has a different "
                      "number of columns than the number of headings"))),)
             _line = dict(zip(_headings, line))
-            if not bool(_line["description"]):
+            if not bool(_line.get("description")):
                 _errs = _errs + (
                     save_error(InvalidValue(filepath.name,
                                             _line[_headings[0]],
                                             "description",
-                                            _line["description"],
+                                            _line.get("description"),
                                             "The description is not provided!")),)
 
             rconn.hset(file_fqkey(fqkey, "metadata", filepath),
-- 
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