From 56ed0f57b816b1023a97b7205268deed0a45c77e Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Fri, 19 Dec 2025 12:53:20 -0600
Subject: Fix issues caught by type-checker.

---
 scripts/rqtl2/phenotypes_qc.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

(limited to 'scripts/rqtl2/phenotypes_qc.py')

diff --git a/scripts/rqtl2/phenotypes_qc.py b/scripts/rqtl2/phenotypes_qc.py
index 9f11f57..72d6c83 100644
--- a/scripts/rqtl2/phenotypes_qc.py
+++ b/scripts/rqtl2/phenotypes_qc.py
@@ -376,7 +376,8 @@ def run_qc(# pylint: disable=[too-many-locals]
         rconn: Redis,
         dbconn: mdb.Connection,
         fullyqualifiedjobid: str,
-        args: Namespace
+        args: Namespace,
+        logger: Logger = logger # pylint: disable=[redefined-outer-name]
 ) -> int:
     """Run quality control checks on the bundle."""
     print("Beginning the quality assurance checks.")
-- 
cgit 1.4.1