From 8fe991c20f27702ee34ffcdd0cbc96e411db8c90 Mon Sep 17 00:00:00 2001 From: Frederick Muriuki Muriithi Date: Mon, 15 Jan 2024 06:07:05 +0300 Subject: Extract common structure into separate modules. --- scripts/rqtl2/entry.py | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 scripts/rqtl2/entry.py (limited to 'scripts/rqtl2/entry.py') diff --git a/scripts/rqtl2/entry.py b/scripts/rqtl2/entry.py new file mode 100644 index 0000000..e2d70a6 --- /dev/null +++ b/scripts/rqtl2/entry.py @@ -0,0 +1,37 @@ +"""Build common script-entry structure.""" +from logging import Logger +from typing import Callable +from argparse import Namespace + +from redis import Redis +from MySQLdb import Connection + +from qc_app.db_utils import database_connection +from qc_app.check_connections import check_db, check_redis + +from scripts.redis_logger import setup_redis_logger + +def build_main(cli_args: Callable[[], Namespace], + run_fn: Callable[[Connection, Namespace], int], + logger: Logger, + loglevel: str = "INFO") -> Callable[[],int]: + """Build a function to be used as an entry-point for scripts.""" + def main(): + args = cli_args() + check_db(args.databaseuri) + check_redis(args.redisuri) + if not args.rqtl2bundle.exists(): + logger.error("File not found: '%s'.", args.rqtl2bundle) + return 2 + + with (Redis.from_url(args.redisuri, decode_responses=True) as rconn, + database_connection(args.databaseuri) as dbconn): + logger.addHandler(setup_redis_logger( + rconn, + args.jobid, + f"{str(args.jobid)}:log-messages", + args.redisexpiry)) + logger.setLevel(loglevel) + return run_fn(dbconn, args) + + return main -- cgit v1.2.3