From e68c807e6598a4087d7c83510ba33c81139f5544 Mon Sep 17 00:00:00 2001 From: Frederick Muriuki Muriithi Date: Tue, 28 Jun 2022 15:20:54 +0300 Subject: Check for inconsistent columns The number columns in each contents line should be equal to the nember of columns in the header line. --- scripts/qc.py | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'scripts/qc.py') diff --git a/scripts/qc.py b/scripts/qc.py index 9bad55e..de01bb7 100644 --- a/scripts/qc.py +++ b/scripts/qc.py @@ -6,8 +6,8 @@ from typing import Union, Callable import magic -from quality_control.errors import InvalidValue from quality_control.utils import make_progress_calculator +from quality_control.errors import InvalidValue, DuplicateHeading from quality_control.parsing import ( take, FileType, @@ -77,7 +77,9 @@ def print_errors(errors, verbose): for error in errors: cols = ( error.column if isinstance(error, InvalidValue) - else ", ".join(str(col) for col in error.columns)) + else (", ".join(str(col) for col in error.columns) + if isinstance(error, DuplicateHeading) + else "-")) errors_exist = True print(f"{starter}{error.line}\t{cols}\t{error.message}") -- cgit v1.2.3