From e451654493e687dc2ec1245b6b340f170d6677d5 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 14 Apr 2025 09:38:50 -0500
Subject: Compute new PubMed IDs.

---
 scripts/phenotypes_bulk_edit.py | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

(limited to 'scripts/phenotypes_bulk_edit.py')

diff --git a/scripts/phenotypes_bulk_edit.py b/scripts/phenotypes_bulk_edit.py
index 30933a6..7de3347 100644
--- a/scripts/phenotypes_bulk_edit.py
+++ b/scripts/phenotypes_bulk_edit.py
@@ -105,7 +105,11 @@ def compute_differences(
     #    b. Publications differences
     db_publications = fetch_phenotype_publications(conn, pheno_xref_ids)
     new_publications = create_new_publications(
-        conn, pmed.fetch_publications(new_pubmed_ids))
+        conn, pmed.fetch_publications(tuple(
+            pubmed_id for pubmed_id in pubmed_ids
+            if pubmed_id not in
+            tuple(row["PubMed_ID"] for row in db_publications))))
+    logger.debug("New Publications: %s", new_publications)
     pub_diff = publications_differences(
         file_contents, db_publications, {
             row["PubMed_ID"]: row["PublicationId"]
-- 
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