From 71c4a871ff01f6b23ab6a5872f7fcf1a018ab86a Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Fri, 9 Aug 2024 14:44:29 -0500
Subject: Define new InvalidValue error type.

Redesign the InvalidValue error type for the R/qtl2 bundles to list
the errors according to the row and column titles rather than line
numbers. This makes the error-reporting independent on whether or not
the file is transposed.

This will replace the use of the older
`quality_control.errors.InvalidValue` error type that depends on the
line and column numbers, and thus cannot work with transposable files.
---
 r_qtl/fileerrors.py | 9 +++++++++
 1 file changed, 9 insertions(+)

(limited to 'r_qtl/fileerrors.py')

diff --git a/r_qtl/fileerrors.py b/r_qtl/fileerrors.py
index e76676c..c253d71 100644
--- a/r_qtl/fileerrors.py
+++ b/r_qtl/fileerrors.py
@@ -1,5 +1,14 @@
 """QC errors as distinguished from actual exceptions"""
 from collections import namedtuple
 
+InvalidValue = namedtuple(
+    "InvalidValue",
+    ("filename",
+     "rowtitle",
+     "coltitle",
+     "cellvalue",
+     "message"))
+
+
 MissingFile = namedtuple(
     "MissingFile", ("controlfilekey", "filename", "message"))
-- 
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