From b419a43c851336aeb57407c72c0a37271fbb2ebc Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 25 Apr 2022 08:25:06 +0300
Subject: Advance seek_position on error

Advance the seek position, once we have yielded up an error to causing
an infinite loop in certain conditions, where the `parse_errors`
function ends up resuming the gile in the same position once it
experiences an error.
---
 quality_control/parsing.py | 1 +
 1 file changed, 1 insertion(+)

(limited to 'quality_control')

diff --git a/quality_control/parsing.py b/quality_control/parsing.py
index e9bd5f7..eb4c989 100644
--- a/quality_control/parsing.py
+++ b/quality_control/parsing.py
@@ -120,6 +120,7 @@ def parse_errors(filepath: str, filetype: FileType, strains: list,
                         "error": __error_type(err),
                         "message": err.args
                     }
+                    seek_pos = seek_pos + len(line)
 
     return (
         error for error in __errors(filepath, filetype, strains, seek_pos)
-- 
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