From d904748a0c8c35d937c6e56fadc7ba52b9f43634 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 8 Apr 2024 09:26:17 +0300
Subject: bug: Handle IntegrityError: Studies cannot have same name.

---
 .../templates/rqtl2/select-probeset-study-id.html  |  7 +++---
 qc_app/upload/rqtl2.py                             | 28 ++++++++++++++--------
 2 files changed, 22 insertions(+), 13 deletions(-)

(limited to 'qc_app')

diff --git a/qc_app/templates/rqtl2/select-probeset-study-id.html b/qc_app/templates/rqtl2/select-probeset-study-id.html
index 23bbbf0..e9a5c13 100644
--- a/qc_app/templates/rqtl2/select-probeset-study-id.html
+++ b/qc_app/templates/rqtl2/select-probeset-study-id.html
@@ -1,5 +1,5 @@
 {%extends "base.html"%}
-{%from "flash_messages.html" import flash_messages, flash_all_messages%}
+{%from "flash_messages.html" import flash_messages %}
 
 {%block title%}Upload R/qtl2 Bundle{%endblock%}
 
@@ -12,13 +12,12 @@
   <p>In this page, you can either select from a existing dataset:</p>
 </div>
 
-{{flash_all_messages()}}
-
 <form method="POST"
       action="{{url_for('upload.rqtl2.select_probeset_study',
 	      species_id=species.SpeciesId, population_id=population.Id)}}"
       id="frm:select-probeset-study">
   <legend class="heading">Select from existing ProbeSet studies</legend>
+  {{flash_messages("error-rqtl2-select-probeset-study")}}
 
   <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
   <input type="hidden" name="population_id"
@@ -66,6 +65,8 @@
       id="frm:create-probeset-study">
   <legend class="heading">Create new ProbeSet study</legend>
 
+  {{flash_messages("error-rqtl2-create-probeset-study")}}
+
   <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
   <input type="hidden" name="population_id"
 	 value="{{population.InbredSetId}}" />
diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py
index 860a6a9..e0fb40c 100644
--- a/qc_app/upload/rqtl2.py
+++ b/qc_app/upload/rqtl2.py
@@ -600,29 +600,37 @@ def select_probeset_dataset(species_id: int, population_id: int):
              methods=["POST"])
 def create_probeset_study(species_id: int, population_id: int):
     """Create a new probeset study."""
+    errorclasses = "alert-error error-rqtl2 error-rqtl2-create-probeset-study"
     with database_connection(app.config["SQL_URI"]) as conn:
         def __thunk__():
             form = request.form
-            select_study_page = redirect(
-                url_for("upload.rqtl2.select_probeset_study",
+            dataset_info_page = redirect(
+                url_for("upload.rqtl2.select_dataset_info",
                         species_id=species_id,
                         population_id=population_id),
                 code=307)
 
             if not (bool(form.get("platformid")) and
                     bool(platform_by_id(conn, int(form["platformid"])))):
-                flash("Invalid platform selected.", "alert-error error-rqtl2")
-                return select_study_page
+                flash("Invalid platform selected.", errorclasses)
+                return dataset_info_page
 
             if not (bool(form.get("tissueid")) and
                     bool(tissue_by_id(conn, int(form["tissueid"])))):
-                flash("Invalid tissue selected.", "alert-error error-rqtl2")
-                return select_study_page
+                flash("Invalid tissue selected.", errorclasses)
+                return dataset_info_page
 
-            study = probeset_create_study(
-                conn, population_id, int(form["platformid"]), int(form["tissueid"]),
-                form["studyname"], form.get("studyfullname") or "",
-                form.get("studyshortname") or "")
+            studyname = form["studyname"]
+            try:
+                study = probeset_create_study(
+                    conn, population_id, int(form["platformid"]), int(form["tissueid"]),
+                    studyname, form.get("studyfullname") or "",
+                    form.get("studyshortname") or "")
+            except mdb.IntegrityError as _ierr:
+                flash(f"ProbeSet study with name '{escape(studyname)}' already "
+                      "exists.",
+                      errorclasses)
+                return dataset_info_page
             return render_template(
                 "rqtl2/create-probe-study-success.html",
                 species=species_by_id(conn, species_id),
-- 
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