From 105934ca5cf253c0f002a007ee57460a7632e2b8 Mon Sep 17 00:00:00 2001 From: Frederick Muriuki Muriithi Date: Mon, 22 Jan 2024 13:37:12 +0300 Subject: UI: Fix some UI bugs. --- qc_app/templates/index.html | 4 +-- qc_app/templates/rqtl2/select-geno-dataset.html | 28 +++++++++++++++-- .../templates/rqtl2/select-probeset-dataset.html | 35 ++++++++++++++++++++++ .../templates/rqtl2/select-probeset-study-id.html | 25 ++++++++++++++-- 4 files changed, 84 insertions(+), 8 deletions(-) (limited to 'qc_app') diff --git a/qc_app/templates/index.html b/qc_app/templates/index.html index 358b521..00714f0 100644 --- a/qc_app/templates/index.html +++ b/qc_app/templates/index.html @@ -21,7 +21,7 @@ -

Expression Data

+

Expression Data

This application assumes that you are familiar with the basics of data @@ -112,7 +112,7 @@

-

samples/cases

+

samples/cases

For the expression data above, you need the samples/cases in your file to diff --git a/qc_app/templates/rqtl2/select-geno-dataset.html b/qc_app/templates/rqtl2/select-geno-dataset.html index 64f886e..1964a79 100644 --- a/qc_app/templates/rqtl2/select-geno-dataset.html +++ b/qc_app/templates/rqtl2/select-geno-dataset.html @@ -43,6 +43,10 @@ {%endfor%} + + Select from the existing genotype datasets for species + {{species.SpeciesName}} ({{species.FullName}}). +

@@ -76,6 +80,9 @@ id="txt:dataset-name" name="dataset-name" required="required" /> + + Provide the new name for the genotype dataset, e.g. "BXDGeno" +
@@ -84,21 +91,36 @@ id="txt:dataset-fullname" name="dataset-fullname" required="required" /> + + + Provide a longer name that better describes the genotype dataset, e.g. + "BXD Genotypes" +
+ name="dataset-shortname" /> + + + Provide a short name for the genotype dataset. This is optional. If not + provided, we'll default to the same value as the "Name" above. +
+ name="dataset-public" + checked="checked" /> + + + Specify whether the dataset will be available publicly. Check to make the + dataset publicly available and uncheck to limit who can access the dataset. +
diff --git a/qc_app/templates/rqtl2/select-probeset-dataset.html b/qc_app/templates/rqtl2/select-probeset-dataset.html index 3e160fd..ebd715e 100644 --- a/qc_app/templates/rqtl2/select-probeset-dataset.html +++ b/qc_app/templates/rqtl2/select-probeset-dataset.html @@ -45,6 +45,8 @@ {%endfor%} + + Select from existing ProbeSet datasets.
@@ -57,6 +59,10 @@

OR

{%endif%} +
+

Create an entirely new ProbeSet dataset for your data.

+
+
{%endfor%} + + + Select the averaging method used for your data. +
@@ -93,6 +103,11 @@ + + + Provide a name for the dataset e.g. "BXDMicroArray_ProbeSet_June03". This + is mandatory MUST be provided. +
@@ -100,12 +115,23 @@ + + + Provide a longer, more descriptive name for the dataset e.g. + "UTHSC Brain mRNA U74Av2 (Jun03) MAS5". This is mandatory and + MUST be provided. +
+ + + Provide a longer, more descriptive name for the dataset e.g. "Br_U_0603_M". + This is optional. +
@@ -113,6 +139,11 @@ checked="checked" title="Whether or not the dataset is accessible by the general public." /> + + + Check to specify that the dataset will be publicly available. Uncheck to + limit access to the dataset. +
@@ -126,6 +157,10 @@ + + + Select from a list of scaling methods. +
diff --git a/qc_app/templates/rqtl2/select-probeset-study-id.html b/qc_app/templates/rqtl2/select-probeset-study-id.html index 34aa54e..35fe655 100644 --- a/qc_app/templates/rqtl2/select-probeset-study-id.html +++ b/qc_app/templates/rqtl2/select-probeset-study-id.html @@ -9,7 +9,7 @@

The R/qtl2 bundle you uploaded contains (a) "pheno" file(s). This data needs to be organised under a study.

-

This page gives you the ability to do that.

+

In this page, you can either select from a existing dataset:

{{flash_all_messages()}} @@ -43,6 +43,7 @@ {%endfor%} + Select from existing ProbeSet studies.
@@ -54,6 +55,10 @@

OR

+
+

Create a new ProbeSet dataset below:

+
+ {%endfor%} + Select from a list of known genomics platforms. +
@@ -95,6 +102,9 @@ {%endfor%} + + Select the Tissue to which the data is concerned. +
@@ -102,18 +112,27 @@ + Provide a name for the study.
- + + + Provide a longer, more descriptive name for the study. This is optional + and you can leave it blank. +
- + + + Provide a shorter name for the study. This is optional and you can leave + it blank. +
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