From 0e74a1589db9f367cdbc3dce232b1b6168e3aca1 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 1 Jul 2024 12:38:01 -0500
Subject: Check for genotype samples in the database

Check for genotype samples in both the R/qtl2 file and in the
database.
---
 qc_app/upload/rqtl2.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

(limited to 'qc_app')

diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py
index 4ff7ba3..31d5a9d 100644
--- a/qc_app/upload/rqtl2.py
+++ b/qc_app/upload/rqtl2.py
@@ -207,7 +207,8 @@ def trigger_rqtl2_bundle_qc(
                 str(jobid),
                 [sys.executable, "-m", "scripts.qc_on_rqtl2_bundle",
                  app.config["SQL_URI"], app.config["REDIS_URL"],
-                 jobs.jobsnamespace(), str(jobid), "--redisexpiry",
+                 jobs.jobsnamespace(), str(jobid), str(species_id),
+                 str(population_id), "--redisexpiry",
                  str(redis_ttl_seconds)],
                 "rqtl2-bundle-qc-job",
                 redis_ttl_seconds,
-- 
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