From 0e74a1589db9f367cdbc3dce232b1b6168e3aca1 Mon Sep 17 00:00:00 2001 From: Frederick Muriuki Muriithi Date: Mon, 1 Jul 2024 12:38:01 -0500 Subject: Check for genotype samples in the database Check for genotype samples in both the R/qtl2 file and in the database. --- qc_app/upload/rqtl2.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) (limited to 'qc_app') diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py index 4ff7ba3..31d5a9d 100644 --- a/qc_app/upload/rqtl2.py +++ b/qc_app/upload/rqtl2.py @@ -207,7 +207,8 @@ def trigger_rqtl2_bundle_qc( str(jobid), [sys.executable, "-m", "scripts.qc_on_rqtl2_bundle", app.config["SQL_URI"], app.config["REDIS_URL"], - jobs.jobsnamespace(), str(jobid), "--redisexpiry", + jobs.jobsnamespace(), str(jobid), str(species_id), + str(population_id), "--redisexpiry", str(redis_ttl_seconds)], "rqtl2-bundle-qc-job", redis_ttl_seconds, -- cgit v1.2.3