From 09b4b70aae5e65516c766882118a897c75a44974 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Fri, 12 Apr 2024 09:13:20 +0300
Subject: Provide tissue-id details to probeset dataset templates

---
 qc_app/upload/rqtl2.py | 14 ++++++++++++++
 1 file changed, 14 insertions(+)

(limited to 'qc_app/upload/rqtl2.py')

diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py
index 66c95b9..bf392a9 100644
--- a/qc_app/upload/rqtl2.py
+++ b/qc_app/upload/rqtl2.py
@@ -870,6 +870,19 @@ def select_dataset_info(species_id: int, population_id: int):
                             platforms=platforms_by_species(conn, species_id),
                             tissues=all_tissues(conn))
 
+                tissue = tissue_by_id(conn, form.get("tissueid", "").strip())
+                if "pheno" in cdata and not bool(tissue):
+                    return render_template(
+                        "rqtl2/select-tissue.html",
+                        species=species,
+                        population=population,
+                        rqtl2_bundle_file=thefile.name,
+                        geno_dataset=geno_dataset,
+                        studies=probeset_studies_by_species_and_population(
+                            conn, species_id, population_id),
+                        platforms=platforms_by_species(conn, species_id),
+                        tissues=all_tissues(conn))
+
                     return render_template(
                         "rqtl2/select-probeset-study-id.html",
                         species=species,
@@ -891,6 +904,7 @@ def select_dataset_info(species_id: int, population_id: int):
                         rqtl2_bundle_file=thefile.name,
                         geno_dataset=geno_dataset,
                         probe_study=probeset_study,
+                        tissue=tissue,
                         datasets=probeset_datasets_by_study(
                             conn, int(form["probe-study-id"])),
                         avgmethods=averaging_methods(conn))
-- 
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