From ee44431de6cf860fe89e796eab2bb0d555d90105 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Tue, 12 Jul 2022 08:51:20 +0300
Subject: Add 'group' and 'tissue' selection.

- Build code to populate the "Group" and "Tissue" dropdown lists
- Enable redirect with POST data (code 307) in case there is input
  error to enable the user fix their errors
- Move hidden fields to macro to reduce repetition
---
 qc_app/templates/dbupdate_hidden_fields.html | 14 +++++++
 qc_app/templates/select_study.html           | 55 ++++++++++++++++++++++------
 2 files changed, 57 insertions(+), 12 deletions(-)
 create mode 100644 qc_app/templates/dbupdate_hidden_fields.html

(limited to 'qc_app/templates')

diff --git a/qc_app/templates/dbupdate_hidden_fields.html b/qc_app/templates/dbupdate_hidden_fields.html
new file mode 100644
index 0000000..cdebeab
--- /dev/null
+++ b/qc_app/templates/dbupdate_hidden_fields.html
@@ -0,0 +1,14 @@
+{%macro hidden_fields(filename, filetype):%}
+
+<!-- {{kwargs}}: mostly for accessing the kwargs in macro -->
+
+<input type="hidden" name="filename" value="{{filename}}" />
+<input type="hidden" name="filetype" value="{{filetype}}" />
+{%if kwargs.get("species"):%}
+<input type="hidden" name="species" value="{{species}}" />
+{%endif%}
+{%if kwargs.get("genechipid"):%}
+<input type="hidden" name="genechipid" value="{{genechipid}}" />
+{%endif%}
+
+{%endmacro%}
diff --git a/qc_app/templates/select_study.html b/qc_app/templates/select_study.html
index 8d7a98b..e4b629c 100644
--- a/qc_app/templates/select_study.html
+++ b/qc_app/templates/select_study.html
@@ -1,4 +1,5 @@
 {%extends "base.html"%}
+{%from "dbupdate_hidden_fields.html" import hidden_fields%}
 
 {%block title%}Select Dataset{%endblock%}
 
@@ -14,10 +15,7 @@
 	id="select-platform-form" data-genechips="{{genechips_data}}"
 	class="two-col-sep-col1">
     <legend>Select from existing study</legend>
-    <input type="hidden" name="filename" value="{{filename}}" />
-    <input type="hidden" name="filetype" value="{{filetype}}" />
-    <input type="hidden" name="species" value="{{species}}" />
-    <input type="hidden" name="genechipid" value="{{genechipid}}" />
+    {{hidden_fields(filename, filetype, species=species, genechipid=genechipid)}}
 
     <fieldset>
       <label for="study" class="form-col-1">study:</label>
@@ -39,19 +37,28 @@
 
   <p class="two-col-sep-separator">OR</p>
 
-  <form method="POST" action="{{url_for('dbinsert.select_study')}}"
+  <form method="POST" action="{{url_for('dbinsert.create_study')}}"
 	id="select-platform-form" data-genechips="{{genechips_data}}"
 	class="two-col-sep-col2">
+    {%with messages = get_flashed_messages(with_categories=true)%}
+    {%if messages:%}
+    <ul>
+      {%for category, message in messages:%}
+      <li class="{{category}}">{{message}}</li>
+      {%endfor%}
+    </ul>
+    {%endif%}
+    {%endwith%}
     <legend>Create new study</legend>
-    <input type="hidden" name="filename" value="{{filename}}" />
-    <input type="hidden" name="filetype" value="{{filetype}}" />
-    <input type="hidden" name="species" value="{{species}}" />
-    <input type="hidden" name="genechipid" value="{{genechipid}}" />
+    {{hidden_fields(filename, filetype, species=species, genechipid=genechipid)}}
 
     <fieldset>
       <label for="studyname" class="form-col-1">name:</label>
       <input type="text" id="studyname" name="studyname" class="form-col-2"
-	     required="required" />
+	     required="required"
+	     {%if studyname:%}
+	     value="{{studyname}}"
+	     {%endif%} />
     </fieldset>
 
     <fieldset>
@@ -68,13 +75,37 @@
 
     <fieldset>
       <label for="group" class="form-col-1">group:</label>
-      <select id="group" name="inbredsetid" class="form-col-2">
+      <select id="group" name="inbredsetid" class="form-col-2"
+	      required="required">
+	<option value="">Select group</option>
+	{%for family in groups:%}
+	<optgroup label="{{family}}">
+	  {%for group in groups[family]:%}
+	  <option value="{{group['InbredSetId']}}"
+		  {%if group["InbredSetId"] == selected_group:%}
+		  selected="selected"
+		  {%endif%}>
+	    {{group["FullName"]}}
+	  </option>
+	  {%endfor%}
+	</optgroup>
+	{%endfor%}
       </select>
     </fieldset>
 
     <fieldset>
       <label for="tissue" class="form-col-1">tissue:</label>
-      <select id="tissue" name="tissueid" class="form-col-2">
+      <select id="tissue" name="tissueid" class="form-col-2"
+	      required="required">
+	<option value="">Select type</option>
+	{%for tissue in tissues:%}
+	<option value="{{tissue['TissueId']}}"
+		{%if tissue["TissueId"] == selected_tissue:%}
+		selected="selected"
+		{%endif%}>
+	  {{tissue["Name"]}}
+	</option>
+	{%endfor%}
       </select>
     </fieldset>
 
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