From f726c71bf1636a838f45363d1613763a2926e34f Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 12 Jun 2024 16:38:54 -0500
Subject: Update html templates to use bootstrap for styling

---
 qc_app/templates/samples/select-population.html |  54 +++++-----
 qc_app/templates/samples/select-species.html    |  15 +--
 qc_app/templates/samples/upload-samples.html    | 132 +++++++++++-------------
 3 files changed, 94 insertions(+), 107 deletions(-)

(limited to 'qc_app/templates/samples')

diff --git a/qc_app/templates/samples/select-population.html b/qc_app/templates/samples/select-population.html
index 5d78826..da19ddc 100644
--- a/qc_app/templates/samples/select-population.html
+++ b/qc_app/templates/samples/select-population.html
@@ -13,33 +13,28 @@
     (e.g. Inbred populations, cell tissue, etc.)</p>
 </div>
 
-<hr />
-
 <form method="POST" action="{{url_for('samples.select_population',
                             species_id=species.SpeciesId)}}">
   <legend class="heading">select grouping/population</legend>
   {{flash_messages("error-select-population")}}
 
   <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
-  <fieldset>
-    <label for="select:inbredset" class="form-col-1">grouping/population</label>
+
+  <div class="form-group">
+    <label for="select:inbredset" class="form-label">grouping/population</label>
     <select id="select:inbredset"
 	    name="inbredset_id"
 	    required="required"
-	    class="form-col-2">
+	    class="form-control">
       <option value="">Select a grouping/population</option>
       {%for pop in populations%}
       <option value="{{pop.InbredSetId}}">
 	{{pop.InbredSetName}} ({{pop.FullName}})</option>
       {%endfor%}
     </select>
-  </fieldset>
+  </div>
 
-  <fieldset>
-    <input type="submit"
-	   value="select population"
-	   class="btn btn-primary form-col-2" />
-  </fieldset>
+  <button type="submit" class="btn btn-primary">select population</button>
 </form>
 
 <p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p>
@@ -50,54 +45,51 @@
   {{flash_messages("error-create-population")}}
 
   <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
-  <fieldset>
+  <div class="form-group">
     <legend>mandatory</legend>
-    <label for="txt:inbredset-name" class="form-col-1">name</label>
+
+    <label for="txt:inbredset-name" class="form-label">name</label>
     <input id="txt:inbredset-name"
 	   name="inbredset_name"
 	   type="text"
 	   required="required"
 	   placeholder="Enter grouping/population name"
-	   class="form-col-2" />
+	   class="form-control" />
 
-    <label for="txt:" class="form-col-1">full name</label>
+    <label for="txt:" class="form-label">full name</label>
     <input id="txt:inbredset-fullname"
 	   name="inbredset_fullname"
 	   type="text"
 	   required = "required"
 	   placeholder="Enter the grouping/population's full name"
-	   class="form-col-2" />
-  </fieldset>
-  <fieldset>
+	   class="form-control" />
+  </div>
+  <div class="form-group">
     <legend>Optional</legend>
 
-    <label for="num:public" class="form-col-1">public?</label>
+    <label for="num:public" class="form-label">public?</label>
     <input id="num:public"
 	   name="public"
 	   type="number"
 	   min="0" max="2" value="2"
-	   class="form-col-2" />
+	   class="form-control" />
 
-    <label for="txt:inbredset-family" class="form-col-1">family</label>
+    <label for="txt:inbredset-family" class="form-label">family</label>
     <input id="txt:inbredset-family"
 	   name="inbredset_family"
 	   type="text"
 	   placeholder="I am not sure what this is about."
-	   class="form-col-2" />
+	   class="form-control" />
 
-    <label for="txtarea:" class="form-col-1">Description</label>
+    <label for="txtarea:" class="form-label">Description</label>
     <textarea id="txtarea:description"
 	      name="description"
 	      rows="5"
 	      placeholder="Enter a description of this grouping/population"
-	      class="form-col-2"></textarea>
-  </fieldset>
-
-  <fieldset>
-    <input type="submit"
-	   value="create grouping/population"
-	   class="btn btn-primary form-col-2" />
-  </fieldset>
+	      class="form-control"></textarea>
+  </div>
+
+  <button type="submit" class="btn btn-primary">create grouping/population</button>
 </form>
 
 {%endblock%}
diff --git a/qc_app/templates/samples/select-species.html b/qc_app/templates/samples/select-species.html
index 44c0d4f..edadc61 100644
--- a/qc_app/templates/samples/select-species.html
+++ b/qc_app/templates/samples/select-species.html
@@ -12,18 +12,19 @@
 
 <form method="POST" action="{{url_for('samples.select_species')}}">
   <legend class="heading">upload samples</legend>
-  <fieldset>
-    <label for="select_species02">Species</label>
-    <select id="select_species02" name="species_id" required="required">
+  <div class="form-group">
+    <label for="select_species02" class="form-label">Species</label>
+    <select id="select_species02"
+            name="species_id"
+            required="required"
+            class="form-control">
       <option value="">Select species</option>
       {%for spec in species%}
       <option value="{{spec.SpeciesId}}">{{spec.MenuName}}</option>
       {%endfor%}
     </select>
-  </fieldset>
+  </div>
 
-  <fieldset>
-    <input type="submit" value="submit" class="btn btn-primary form-col-2" />
-  </fieldset>
+  <button type="submit" class="btn btn-primary">submit</button>
 </form>
 {%endblock%}
diff --git a/qc_app/templates/samples/upload-samples.html b/qc_app/templates/samples/upload-samples.html
index 29b08f6..e62de57 100644
--- a/qc_app/templates/samples/upload-samples.html
+++ b/qc_app/templates/samples/upload-samples.html
@@ -3,16 +3,7 @@
 
 {%block title%}Upload Samples{%endblock%}
 
-{%block css%}
-<style type="text/css">
-  #form-samples {
-      background-color: #D1D1D1;
-  }
-  #form-samples fieldset:nth-child(odd){
-      background-color: white;
-  }
-</style>
-{%endblock%}
+{%block css%}{%endblock%}
 
 {%block contents%}
 <h1 class="heading">upload samples</h1>
@@ -20,23 +11,23 @@
 {{flash_messages("alert-success")}}
 
 <p>You can now upload a character-separated value (CSV) file that contains
-    details about your samples. The CSV file should have the following fields:
-    <dl>
-      <dt>Name</dt>
-      <dd>The primary name for the sample</dd>
+  details about your samples. The CSV file should have the following fields:
+  <dl>
+    <dt>Name</dt>
+    <dd>The primary name for the sample</dd>
 
-      <dt>Name2</dt>
-      <dd>A secondary name for the sample. This can simply be the same as
-	<strong>Name</strong> above. This field <strong>MUST</strong> contain a
-	value.</dd>
+    <dt>Name2</dt>
+    <dd>A secondary name for the sample. This can simply be the same as
+      <strong>Name</strong> above. This field <strong>MUST</strong> contain a
+      value.</dd>
 
-      <dt>Symbol</dt>
-      <dd>A symbol for the sample. Can be an empty field.</dd>
+    <dt>Symbol</dt>
+    <dd>A symbol for the sample. Can be an empty field.</dd>
 
-      <dt>Alias</dt>
-      <dd>An alias for the sample. Can be an empty field.</dd>
-    </dl>
-  </p>
+    <dt>Alias</dt>
+    <dd>An alias for the sample. Can be an empty field.</dd>
+  </dl>
+</p>
 
 <form id="form-samples"
       method="POST"
@@ -45,32 +36,32 @@
               population_id=population.InbredSetId)}}"
       enctype="multipart/form-data">
   <legend class="heading">upload samples</legend>
-  <fieldset>
+
+  <div class="form-group">
     <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
-    <label class="form-col-1">species:</label>
-    <span class="form-col-2">{{species.SpeciesName}} [{{species.MenuName}}]</span>
-  </fieldset>
+    <label class="form-label">species:</label>
+    <span class="form-text">{{species.SpeciesName}} [{{species.MenuName}}]</span>
+  </div>
 
-  <fieldset>
+  <div class="form-group">
     <input type="hidden" name="inbredset_id" value="{{population.InbredSetId}}" />
-    <label class="form-col-1">grouping/population:</label>
-    <span class="form-col-2">{{population.Name}} [{{population.FullName}}]</span>
-  </fieldset>
+    <label class="form-label">grouping/population:</label>
+    <span class="form-text">{{population.Name}} [{{population.FullName}}]</span>
+  </div>
 
-  <fieldset>
-    <input id="chk:heading"
-	   type="checkbox"
-	   name="first_line_heading"
-	   class="form-col-1" />
-    <label for="chk:heading" class="form-col-2">first line is a heading?</label>
-  </fieldset>
+  <div class="form-group">
+    <label for="file-samples" class="form-label">select file</label>
+    <input type="file" name="samples_file" id="file:samples"
+	   accept="text/csv, text/tab-separated-values"
+	   class="form-control" />
+  </div>
 
-  <fieldset>
-    <label for="select:separator" class="form-col-1">field separator</label>
+  <div class="form-group">
+    <label for="select:separator" class="form-label">field separator</label>
     <select id="select:separator"
 	    name="separator"
 	    required="required"
-	    class="form-col-2">
+	    class="form-control">
       <option value="">Select separator for your file: (default is comma)</option>
       <option value="&#x0009;">TAB</option>
       <option value="&#x0020;">Space</option>
@@ -81,43 +72,46 @@
     <input id="txt:separator"
 	   type="text"
 	   name="other_separator"
-	   class="form-col-2" />
-    <span class="form-col-2">
-      This is the character that separates the fields in your CSV file. If you
-      select "<strong>Other</strong>", then you must provide the separator in
-      the text field provided.
-    </span>
-  </fieldset>
-
-  <fieldset>
-    <label for="txt:delimiter" class="form-col-1">field delimiter</label>
+	   class="form-control" />
+    <small class="form-text text-muted">
+      If you select '<strong>Other</strong>' for the field separator value,
+      enter the character that separates the fields in your CSV file in the form
+      field below.
+    </small>
+  </div>
+
+  <div class="form-group form-check">
+    <input id="chk:heading"
+	   type="checkbox"
+	   name="first_line_heading"
+	   class="form-check-input" />
+    <label for="chk:heading" class="form-check-label">
+      first line is a heading?</label>
+    <small class="form-text text-muted">
+      Select this if the first line in your file contains headings for the
+      columns.
+    </small>
+  </div>
+
+  <div class="form-group">
+    <label for="txt:delimiter" class="form-label">field delimiter</label>
     <input id="txt:delimiter"
 	   type="text"
 	   name="field_delimiter"
 	   maxlength="1"
-	   class="form-col-2" />
-    <span class="form-col-2">
+	   class="form-control" />
+    <small class="form-text text-muted">
       If there is a character delimiting the string texts within particular
       fields in your CSV, provide the character here. This can be left blank if
       no such delimiters exist in your file.
-    </span>
-  </fieldset>
+    </small>
+  </div>
 
-  <fieldset>
-    <label for="file:samples" class="form-col-1">select file</label>
-    <input type="file" name="samples_file" id="file:samples"
-	   accept="text/csv, text/tab-separated-values"
-	   class="form-col-2" />
-  </fieldset>
-
-  <fieldset>
-    <input type="submit"
-	   value="upload samples file"
-	   class="btn btn-primary form-col-2" />
-  </fieldset>
+  <button type="submit"
+	  class="btn btn-primary">upload samples file</button>
 </form>
 
-<table id="tbl:samples-preview">
+<table id="tbl:samples-preview" class="table">
   <caption class="heading">preview content</caption>
 
   <thead>
-- 
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