From 8595c75345fb5849a4d8894f3ee7a926dd8cdf8f Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 8 Jan 2024 07:25:35 +0300
Subject: Upload R/qtl2 zip bundle and check for errors.

---
 qc_app/templates/rqtl2/upload-rqtl2-bundle.html | 44 +++++++++++++++++++++++++
 1 file changed, 44 insertions(+)
 create mode 100644 qc_app/templates/rqtl2/upload-rqtl2-bundle.html

(limited to 'qc_app/templates/rqtl2')

diff --git a/qc_app/templates/rqtl2/upload-rqtl2-bundle.html b/qc_app/templates/rqtl2/upload-rqtl2-bundle.html
new file mode 100644
index 0000000..6491e6b
--- /dev/null
+++ b/qc_app/templates/rqtl2/upload-rqtl2-bundle.html
@@ -0,0 +1,44 @@
+{%extends "base.html"%}
+{%from "flash_messages.html" import flash_messages%}
+
+{%block title%}Upload R/qtl2 Bundle{%endblock%}
+
+{%block contents%}
+<h2 class="heading">Upload R/qtl2 Bundle</h2>
+
+<form id="frm-upload-rqtl2-bundle"
+      action="{{url_for('upload.rqtl2.upload_rqtl2_bundle',
+	      species_id=species.SpeciesId,
+	      population_id=population.InbredSetId)}}"
+      method="POST"
+      enctype="multipart/form-data">
+  <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+  <input type="hidden" name="population_id"
+	 value="{{population.InbredSetId}}" />
+
+  {{flash_messages("error-rqtl2")}}
+
+  <fieldset>
+    <legend>file upload</legend>
+    <label for="file:rqtl2-bundle">R/qtl2 bundle</label>
+    <input type="file" id="file:rqtl2-bundle" name="rqtl2_bundle"
+	   accept="application/zip, .zip"
+	   required="required" />
+    <span class="form-input-help"><p>Provide a valid R/qtl2 zip file here. In
+      particular, ensure your zip bundle contains exactly one control file and
+      the corresponding files mentioned in the control file.</p>
+      <p>The control file can be either a YAML or JSON file. <em>ALL</em> other
+	data files in the zip bundle should be CSV files.</p>
+      <p>See the
+	<a href="https://kbroman.org/qtl2/assets/vignettes/input_files.html"
+	   target="_blank">
+	  R/qtl2 file format specifications</a> for more details.</p></span>
+  </fieldset>
+  <fieldset>
+    <input type="submit"
+	   value="upload R/qtl2 bundle"
+	   class="btn btn-main form-col-2" />
+  </fieldset>
+</form>
+
+{%endblock%}
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