From 33e106334a212853842c30f8c595da1099c3d84e Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 17 Jan 2024 11:41:43 +0300
Subject: UI: Select ProbeSet study.

---
 .../templates/rqtl2/select-probeset-dataset.html   | 17 +++++++
 .../templates/rqtl2/select-probeset-study-id.html  | 59 ++++++++++++++++++++++
 2 files changed, 76 insertions(+)
 create mode 100644 qc_app/templates/rqtl2/select-probeset-dataset.html
 create mode 100644 qc_app/templates/rqtl2/select-probeset-study-id.html

(limited to 'qc_app/templates/rqtl2')

diff --git a/qc_app/templates/rqtl2/select-probeset-dataset.html b/qc_app/templates/rqtl2/select-probeset-dataset.html
new file mode 100644
index 0000000..c0c6401
--- /dev/null
+++ b/qc_app/templates/rqtl2/select-probeset-dataset.html
@@ -0,0 +1,17 @@
+{%extends "base.html"%}
+{%from "flash_messages.html" import flash_messages%}
+
+{%block title%}Upload R/qtl2 Bundle{%endblock%}
+
+{%block contents%}
+<h2 class="heading">Phenotype(ProbeSet) Dataset</h2>
+
+<div class="explainer">
+  <p>The R/qtl2 bundle you uploaded contains (a) "<strong>pheno</strong>"
+    file(s). This data needs to be organised under a dataset..</p>
+  <p>This page gives you the ability to do that.</p>
+</div>
+
+<p style="color: red; font-weight: bold;">Under Construction</p>
+
+{%endblock%}
diff --git a/qc_app/templates/rqtl2/select-probeset-study-id.html b/qc_app/templates/rqtl2/select-probeset-study-id.html
new file mode 100644
index 0000000..bb31fde
--- /dev/null
+++ b/qc_app/templates/rqtl2/select-probeset-study-id.html
@@ -0,0 +1,59 @@
+{%extends "base.html"%}
+{%from "flash_messages.html" import flash_messages%}
+
+{%block title%}Upload R/qtl2 Bundle{%endblock%}
+
+{%block contents%}
+<h2 class="heading">Phenotype(ProbeSet) Study</h2>
+
+<div class="explainer">
+  <p>The R/qtl2 bundle you uploaded contains (a) "<strong>pheno</strong>"
+    file(s). This data needs to be organised under a study.</p>
+  <p>This page gives you the ability to do that.</p>
+</div>
+
+<form method="POST"
+      action="#">
+  <legend class="heading">Select from existing ProbeSet datasets</legend>
+
+  <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+  <input type="hidden" name="population_id"
+	 value="{{population.InbredSetId}}" />
+  <input type="hidden" name="rqtl2_bundle_file"
+	 value="{{rqtl2_bundle_file}}" />
+  <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
+
+  <fieldset>
+    <label for="select:probe-study">Study</label>
+    <select id="select:probe-study"
+	    name="probe-study-id"
+	    required="required"
+	    {%if studies | length == 0%}disabled="disabled"{%endif%}>
+      <option value="">Select a study</option>
+      {%for study in studies%}
+      <option value={{study.Id}}>
+	{{study.Name}}
+	{%if study.FullName%}
+	 -- ({{study.FullName}})
+	{%endif%}
+      </option>
+      {%endfor%}
+    </select>
+  </fieldset>
+
+  <fieldset>
+    <input type="submit"
+	   value="select study"
+	   class="btn btn-main form-col-2" />
+  </fieldset>
+</form>
+
+<p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p>
+
+<form method="POST"
+      action="#">
+  <legend class="heading">Create new ProbeSet dataset</legend>
+  <strong style="color: red;font-weight:bold;">Under construction</strong>
+</form>
+
+{%endblock%}
-- 
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