From f726c71bf1636a838f45363d1613763a2926e34f Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 12 Jun 2024 16:38:54 -0500
Subject: Update html templates to use bootstrap for styling

---
 qc_app/templates/rqtl2/select-tissue.html | 181 +++++++++++++++---------------
 1 file changed, 92 insertions(+), 89 deletions(-)

(limited to 'qc_app/templates/rqtl2/select-tissue.html')

diff --git a/qc_app/templates/rqtl2/select-tissue.html b/qc_app/templates/rqtl2/select-tissue.html
index 78d5afe..34e1758 100644
--- a/qc_app/templates/rqtl2/select-tissue.html
+++ b/qc_app/templates/rqtl2/select-tissue.html
@@ -6,107 +6,110 @@
 {%block contents%}
 <h2 class="heading">Tissue</h2>
 
-<div class="explainer">
+<div class="row">
   <p>The data you are uploading concerns a tissue, cell, organ, or other
     biological material used in an experiment.</p>
   <p>Select the appropriate biological material below</p>
 </div>
 
 {%if tissues | length > 0%}
-<form method="POST"
-      action="{{url_for('upload.rqtl2.select_tissue',
-	      species_id=species.SpeciesId, population_id=population.Id)}}"
-      id="frm:select-probeset-dataset">
-  <legend class="heading">Select from existing ProbeSet datasets</legend>
-  {{flash_messages("error-select-tissue")}}
-
-  <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
-  <input type="hidden" name="population_id"
-	 value="{{population.InbredSetId}}" />
-  <input type="hidden" name="rqtl2_bundle_file"
-	 value="{{rqtl2_bundle_file}}" />
-  <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
-
-  <fieldset>
-    <label for="select-tissue">Tissue</label>
-    <select id="select-tissue"
-	    name="tissueid"
-	    required="required"
-	    {%if tissues | length == 0%}disabled="disabled"{%endif%}>
-      <option value="">Select a tissue</option>
-      {%for tissue in tissues%}
-      <option value={{tissue.Id}}>
-	{{tissue.Name}}
-	{%if tissue.Short_Name%}
-	 -- ({{tissue.Short_Name}})
-	{%endif%}
-      </option>
-      {%endfor%}
-    </select>
-
-    <span class="form-col-2">Select from existing biological material.</span>
-  </fieldset>
-
-  <fieldset>
-    <input type="submit"
-	   value="use selected"
-	   class="btn btn-primary form-col-2" />
-  </fieldset>
-</form>
+<div class="row">
+  <form method="POST"
+        action="{{url_for('upload.rqtl2.select_tissue',
+	        species_id=species.SpeciesId, population_id=population.Id)}}"
+        id="frm:select-probeset-dataset">
+    <legend class="heading">Select from existing ProbeSet datasets</legend>
+    {{flash_messages("error-select-tissue")}}
+
+    <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+    <input type="hidden" name="population_id"
+	   value="{{population.InbredSetId}}" />
+    <input type="hidden" name="rqtl2_bundle_file"
+	   value="{{rqtl2_bundle_file}}" />
+    <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
+
+    <div class="form-group">
+      <label class="form-label" for="select-tissue">Tissue</label>
+      <select id="select-tissue"
+	      name="tissueid"
+	      required="required"
+	      {%if tissues | length == 0%}disabled="disabled"{%endif%}
+              class="form-control"
+              aria-describedby="help-select-tissue">
+        <option value="">Select a tissue</option>
+        {%for tissue in tissues%}
+        <option value={{tissue.Id}}>
+	  {{tissue.Name}}
+	  {%if tissue.Short_Name%}
+	  -- ({{tissue.Short_Name}})
+	  {%endif%}
+        </option>
+        {%endfor%}
+      </select>
+
+      <span id="help-select-tissue" class="form-text text-muted">
+        Select from existing biological material.</span>
+    </div>
+
+    <button type="submit" class="btn btn-primary">use selected</button>
+  </form>
+</div>
 
-<p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p>
+<div class="row">
+  <p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p>
+</div>
 {%endif%}
 
-<div class="explainer">
+<div class="row">
   <p>If you cannot find the biological material in the drop-down above, add it
     to the system below.</p>
-</div>
 
-<form method="POST"
-      action="{{url_for('upload.rqtl2.create_tissue',
-	      species_id=species.SpeciesId, population_id=population.Id)}}"
-      id="frm:create-probeset-dataset">
-  <legend class="heading">Add new tissue, organ or biological material</legend>
-  {{flash_messages("error-create-tissue")}}
-
-  <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
-  <input type="hidden" name="population_id"
-	 value="{{population.InbredSetId}}" />
-  <input type="hidden" name="rqtl2_bundle_file"
-	 value="{{rqtl2_bundle_file}}" />
-  <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
-
-  <fieldset>
-    <label for="tissue-name">name</label>
-    <input type="text"
-           id="txt-tissuename"
-           name="tissuename"
-           required="required"
-           title = "A name to identify the tissue, organ or biological material." />
-
-    <span class="form-col-2">
-      A name to identify the tissue, organ or biological material.
-    </span>
-  </fieldset>
-
-  <fieldset>
-    <label for="txt-shortname">short name</label>
-    <input type="text" id="txt-tissueshortname" name="tissueshortname"
-	   required="required"
-	   maxlength="7"
-	   title="A short name (e.g. 'Mam') for the biological material." />
-
-    <span class="form-col-2">
-      Provide a short name for the tissue, organ or biological material used in
-      the experiment.
-    </span>
-  </fieldset>
-
-  <fieldset>
-    <input type="submit"
-	   value="add new material"
-	   class="btn btn-primary form-col-2" />
-  </fieldset>
+  <form method="POST"
+        action="{{url_for('upload.rqtl2.create_tissue',
+	        species_id=species.SpeciesId, population_id=population.Id)}}"
+        id="frm:create-probeset-dataset">
+    <legend class="heading">Add new tissue, organ or biological material</legend>
+    {{flash_messages("error-create-tissue")}}
+
+    <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+    <input type="hidden" name="population_id"
+	   value="{{population.InbredSetId}}" />
+    <input type="hidden" name="rqtl2_bundle_file"
+	   value="{{rqtl2_bundle_file}}" />
+    <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
+
+    <div class="form-group">
+      <label class="form-label" for="tissue-name">name</label>
+      <input type="text"
+             id="txt-tissuename"
+             name="tissuename"
+             required="required"
+             title = "A name to identify the tissue, organ or biological material."
+             class="form-control"
+             aria-describedby="help-tissue-name" />
+
+      <span class="form-text text-muted" id="help-tissue-name">
+        A name to identify the tissue, organ or biological material.
+      </span>
+    </div>
+
+    <div class="form-group">
+      <label for="txt-shortname" class="form-label">short name</label>
+      <input type="text" id="txt-tissueshortname" name="tissueshortname"
+	     required="required"
+	     maxlength="7"
+	     title="A short name (e.g. 'Mam') for the biological material."
+             class="form-control"
+             aria-describedby="help-tissue-short-name" />
+
+      <span class="form-text text-muted" id="help-tissue-short-name">
+        Provide a short name for the tissue, organ or biological material used in
+        the experiment.
+      </span>
+    </div>
+
+    <button type="submit" class="btn btn-primary" />add new material</button>
 </form>
+</div>
 
 {%endblock%}
-- 
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