From ee0cf7de526849f228c73b744bf66d22c30b34de Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Tue, 2 Jan 2024 09:30:57 +0300
Subject: Mark tests as unit tests.

---
 tests/qc/test_cells.py            | 4 +++-
 tests/qc/test_error_collection.py | 3 +++
 tests/qc/test_header.py           | 6 ++++++
 3 files changed, 12 insertions(+), 1 deletion(-)

diff --git a/tests/qc/test_cells.py b/tests/qc/test_cells.py
index f5411fe..51e8bcf 100644
--- a/tests/qc/test_cells.py
+++ b/tests/qc/test_cells.py
@@ -10,6 +10,7 @@ from quality_control.errors import InvalidValue
 from quality_control.average import invalid_value as avg_invalid_value
 from quality_control.standard_error import invalid_value as se_invalid_value
 
+@pytest.mark.unit_test
 @given(num_str=st.from_regex(
     r"^(?!([0-9]+\.[0-9]{1,}|0+)).*", fullmatch=True))
 def test_cell_value_errors_with_invalid_inputs2(num_str):
@@ -48,6 +49,7 @@ def test_cell_average_value_errors_if_not_three_decimal_places2(num_str):
             f"Invalid value '{num_str}'. Expected string representing a number "
             "with exactly three decimal places."))
 
+@pytest.mark.unit_test
 @given(num_str=st.from_regex(r"^[0-9]+\.[0-9]{1,}$", fullmatch=True))
 def test_cell_average_value_pass_if_three_decimal_places(num_str):
     """
@@ -77,7 +79,7 @@ def test_cell_standard_error_value_errors_if_less_than_six_decimal_places2(num_s
             f"Invalid value '{num_str}'. Expected string representing a number "
             "with at least six decimal places."))
 
-
+@pytest.mark.unit_test
 @given(num_str=st.from_regex(r"^[0-9]+\.[0-9]{1,}$", fullmatch=True))
 def test_cell_standard_error_value_pass_if_six_or_more_decimal_places(num_str):
     """
diff --git a/tests/qc/test_error_collection.py b/tests/qc/test_error_collection.py
index ee1e6c2..25f5d01 100644
--- a/tests/qc/test_error_collection.py
+++ b/tests/qc/test_error_collection.py
@@ -6,6 +6,7 @@ from quality_control.parsing import take, FileType, collect_errors
 from quality_control.errors import (
     InvalidValue, DuplicateHeading, InconsistentColumns)
 
+@pytest.mark.unit_test
 @pytest.mark.parametrize(
     "sample,num,expected",
     ((range(0,25), 5, [0, 1, 2, 3, 4]),
@@ -18,6 +19,7 @@ def test_take(sample, num, expected):
     assert taken == expected
 
 @pytest.mark.slow
+@pytest.mark.unit_test
 @pytest.mark.parametrize(
     "filepath,filetype,count",
     (("tests/test_data/average_crlf.tsv", FileType.AVERAGE, 10),
@@ -36,6 +38,7 @@ def test_collect_errors(filepath, filetype, strains, count):
         return isinstance(item, (InvalidValue, DuplicateHeading))
     assert all(__valid_instance(error) for error in results)
 
+@pytest.mark.unit_test
 @pytest.mark.parametrize(
     "filepath,filetype,expected",
     (("tests/test_data/average_inconsistent_columns.tsv", FileType.AVERAGE,
diff --git a/tests/qc/test_header.py b/tests/qc/test_header.py
index 2557e85..5e54122 100644
--- a/tests/qc/test_header.py
+++ b/tests/qc/test_header.py
@@ -7,6 +7,7 @@ from quality_control.errors import InvalidValue, DuplicateHeading
 from quality_control.headers import (
     invalid_header, invalid_headings, duplicate_headings)
 
+@pytest.mark.unit_test
 @given(headers=st.lists(st.text(max_size=10), max_size=1))
 def test_invalid_header_with_list_of_one_value(headers):
     """Test `invalid_header` with invalid header row"""
@@ -14,6 +15,7 @@ def test_invalid_header_with_list_of_one_value(headers):
         0, 0, "<TAB>".join(headers),
         "The header MUST contain at least 2 columns")
 
+@pytest.mark.unit_test
 @given(headings=st.lists(st.text(min_size=2, max_size=10), min_size=2))
 def test_invalid_headings_with_invalid_inputs(headings):
     "Verify that the check for header validity works"
@@ -21,6 +23,7 @@ def test_invalid_headings_with_invalid_inputs(headings):
         InvalidValue(0, col, heading, f"'{heading}' not a valid strain.")
         for col, heading in enumerate(headings, start=2))
 
+@pytest.mark.unit_test
 @pytest.mark.parametrize(
     "headers", [
         (("ProbeSet", "BXD3", "BXD1")),
@@ -29,6 +32,7 @@ def test_invalid_header_with_valid_headers(headers):
     "Verify that the check for header validity works"
     assert invalid_header(0, headers) is None
 
+@pytest.mark.unit_test
 @pytest.mark.parametrize(
     "strains,headings", [
         (("BXD1", "BXD2", "BXD3"), ("BXD3", "BXD1")),
@@ -38,6 +42,7 @@ def test_invalid_headings_with_valid_headings(strains, headings):
     "Verify that the check for header validity works"
     assert invalid_headings(0, strains, headings) == tuple()
 
+@pytest.mark.unit_test
 @pytest.mark.parametrize(
     "headers,repeated", [
         (("ProbeSet", "BXD3", "BXD1", "BXD1"), {"BXD1": (3, 4)}),
@@ -51,6 +56,7 @@ def test_duplicate_headers_with_repeated_column_headings(headers, repeated):
             f"{','.join(str(i) for i in cols)}"))
         for head, cols in repeated.items())
 
+@pytest.mark.unit_test
 @pytest.mark.parametrize(
     "headers", [
         (("ProbeSet", "BXD3", "BXD1")),
-- 
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