From d5833b207185597d63bbc5ff2b0cc0df6df4ab69 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 8 Apr 2024 10:04:38 +0300
Subject: Fix pylint and mypy errors.

---
 qc_app/upload/rqtl2.py        | 4 ++--
 scripts/qc_on_rqtl2_bundle.py | 1 -
 2 files changed, 2 insertions(+), 3 deletions(-)

diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py
index 876f17c..04bfa5b 100644
--- a/qc_app/upload/rqtl2.py
+++ b/qc_app/upload/rqtl2.py
@@ -653,7 +653,7 @@ def create_probeset_dataset(species_id: int, population_id: int):#pylint: disabl
     """Create a new probeset dataset."""
     errorclasses = "alert-error error-rqtl2 error-rqtl2-create-probeset-dataset"
     with database_connection(app.config["SQL_URI"]) as conn:
-        def __thunk__():
+        def __thunk__():#pylint: disable=[too-many-return-statements]
             form = request.form
             summary_page = redirect(url_for("upload.rqtl2.select_dataset_info",
                                             species_id=species_id,
@@ -694,7 +694,7 @@ def create_probeset_dataset(species_id: int, population_id: int):#pylint: disabl
                        "from list of datasets instead."),
                       errorclasses)
                 return summary_page
-            except Exception as _exc:
+            except Exception as _exc:# pylint: disable=[broad-except]
                 app.logger.debug("Error creating ProbeSet dataset: %s",
                                  traceback.format_exc())
                 flash(("There was a problem creating your dataset. Please try "
diff --git a/scripts/qc_on_rqtl2_bundle.py b/scripts/qc_on_rqtl2_bundle.py
index 7e77104..deef8fe 100644
--- a/scripts/qc_on_rqtl2_bundle.py
+++ b/scripts/qc_on_rqtl2_bundle.py
@@ -16,7 +16,6 @@ from quality_control.errors import InvalidValue
 from quality_control.checks import decimal_points_error
 
 from qc_app import jobs
-from qc_app.db_utils import database_connection
 from qc_app.check_connections import check_db, check_redis
 
 from r_qtl import errors as rqe
-- 
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