From d30c5e255e5f3892a1a18e26d1de208773b1d2b9 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Tue, 16 Dec 2025 14:21:05 -0600
Subject: Streamlined UI for samples.

---
 uploader/samples/views.py                        |  4 +-
 uploader/templates/samples/sui-base.html         | 19 +++++
 uploader/templates/samples/sui-list-samples.html | 98 ++++++++++++++++++++++++
 3 files changed, 120 insertions(+), 1 deletion(-)
 create mode 100644 uploader/templates/samples/sui-base.html
 create mode 100644 uploader/templates/samples/sui-list-samples.html

diff --git a/uploader/samples/views.py b/uploader/samples/views.py
index f8baf7e..fcb895d 100644
--- a/uploader/samples/views.py
+++ b/uploader/samples/views.py
@@ -11,6 +11,8 @@ from flask import (flash,
                    Blueprint,
                    current_app as app)
 
+from uploader.sui import sui_template
+
 from uploader import jobs
 from uploader.files import save_file
 from uploader.flask_extensions import url_for
@@ -86,7 +88,7 @@ def list_samples(species: dict, population: dict, **kwargs):# pylint: disable=[u
         total_samples = len(all_samples)
         offset = max(safe_int(request.args.get("from") or 0), 0)
         count = int(request.args.get("count") or 20)
-        return render_template("samples/list-samples.html",
+        return render_template(sui_template("samples/list-samples.html"),
                                species=species,
                                population=population,
                                samples=all_samples[offset:offset+count],
diff --git a/uploader/templates/samples/sui-base.html b/uploader/templates/samples/sui-base.html
new file mode 100644
index 0000000..ee08e2e
--- /dev/null
+++ b/uploader/templates/samples/sui-base.html
@@ -0,0 +1,19 @@
+{%extends "populations/sui-base.html"%}
+{%from "populations/macro-display-population-card.html" import display_sui_population_card%}
+
+{%block breadcrumbs%}
+{{super()}}
+<li class="breadcrumb-item">Manage Samples</li>
+{%endblock%}
+
+{%block contents%}
+<div class="row">
+  <h2 class="heading">{{population.FullName}} ({{population.Name}})</h2>
+</div>
+{%endblock%}
+
+
+
+{%block sidebarcontents%}
+{{display_sui_population_card(species, population)}}
+{%endblock%}
diff --git a/uploader/templates/samples/sui-list-samples.html b/uploader/templates/samples/sui-list-samples.html
new file mode 100644
index 0000000..e9ed71a
--- /dev/null
+++ b/uploader/templates/samples/sui-list-samples.html
@@ -0,0 +1,98 @@
+{%extends "samples/sui-base.html"%}
+{%from "flash_messages.html" import flash_all_messages%}
+{%from "populations/macro-select-population.html" import select_population_form%}
+
+{%block title%}Samples &mdash; List Samples{%endblock%}
+
+{%block contents%}
+{{super()}}
+
+<div class="row">
+  <h3 class="subheading">manage samples</h3>
+  {{flash_all_messages()}}
+</div>
+
+<div class="row">
+  <div class="col">
+    <a href="{{url_for('species.populations.samples.upload_samples',
+             species_id=species.SpeciesId,
+             population_id=population.Id)}}"
+       title="Add samples for population '{{population.FullName}}' from species
+              '{{species.FullName}}'."
+       class="btn btn-primary">add new samples</a>
+  </div>
+</div>
+
+{%if samples | length > 0%}
+<div class="row">
+  <p>
+    Population "{{population.FullName}} ({{population.Name}})" already has
+    <strong>{{total_samples}}</strong> samples/individuals entered. You can
+    explore the list of samples in the table below.
+  </p>
+</div>
+
+<div class="row">
+  <div class="col-md-2">
+    {%if offset > 0:%}
+    <a href="{{url_for('species.populations.samples.list_samples',
+             species_id=species.SpeciesId,
+             population_id=population.Id,
+             from=offset-count,
+             count=count)}}">
+      <span class="glyphicon glyphicon-backward"></span>
+      Previous
+    </a>
+    {%endif%}
+  </div>
+
+  <div class="col-md-8" style="text-align: center;">
+    Samples {{offset}} &mdash; {{offset+(count if offset + count < total_samples else total_samples - offset)}} / {{total_samples}}
+                                                                   </div>
+
+  <div class="col-md-2">
+    {%if offset + count < total_samples:%}
+    <a href="{{url_for('species.populations.samples.list_samples',
+             species_id=species.SpeciesId,
+             population_id=population.Id,
+             from=offset+count,
+             count=count)}}">
+      Next
+      <span class="glyphicon glyphicon-forward"></span>
+    </a>
+    {%endif%}
+  </div>
+</div>
+<div class="row">
+  <table class="table">
+    <thead>
+      <tr>
+        <th></th>
+        <th>Name</th>
+        <th>Auxilliary Name</th>
+        <th>Symbol</th>
+        <th>Alias</th>
+      </tr>
+    </thead>
+
+    <tbody>
+      {%for sample in samples%}
+      <tr>
+        <td>{{sample.sequence_number}}</td>
+        <td>{{sample.Name}}</td>
+        <td>{{sample.Name2}}</td>
+        <td>{{sample.Symbol or "-"}}</td>
+        <td>{{sample.Alias or "-"}}</td>
+      </tr>
+      {%endfor%}
+    </tbody>
+  </table>
+</div>
+{%else%}
+<div class="row">
+  <p>There are no samples entered for this population. Click the "Add Samples"
+    button above, to add some new samples.</p>
+</div>
+{%endif%}
+
+{%endblock%}
-- 
cgit 1.4.1