From c2b93065da00ff6777ff48b7844adeb82ec65eda Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 13 Oct 2025 13:29:46 -0500
Subject: Fix linting errors.

---
 uploader/phenotypes/models.py   | 12 +++++++-----
 uploader/publications/models.py |  2 +-
 2 files changed, 8 insertions(+), 6 deletions(-)

diff --git a/uploader/phenotypes/models.py b/uploader/phenotypes/models.py
index b30f624..e40155f 100644
--- a/uploader/phenotypes/models.py
+++ b/uploader/phenotypes/models.py
@@ -321,10 +321,12 @@ def __pre_process_phenotype_data__(row):
     }
 
 
-def create_new_phenotypes(conn: mdb.Connection,
-                          population_id: int,
-                          publication_id: int,
-                          phenotypes: Iterable[dict]) -> tuple[dict, ...]:
+def create_new_phenotypes(# pylint: disable=[too-many-locals]
+        conn: mdb.Connection,
+        population_id: int,
+        publication_id: int,
+        phenotypes: Iterable[dict]
+) -> tuple[dict, ...]:
     """Add entirely new phenotypes to the database. WARNING: Not thread-safe."""
     _phenos = tuple()
     with conn.cursor(cursorclass=DictCursor) as cursor:
@@ -393,7 +395,7 @@ def create_new_phenotypes(conn: mdb.Connection,
                              for row in cursor.fetchall())
             if len(existing) > 0:
                 # Narrow this exception, perhaps?
-                raise Exception(
+                raise Exception(# pylint: disable=[broad-exception-raised]
                     "Found already existing phenotypes with the following "
                     "'Pre-publication abbreviations':\n\t"
                     "\n\t".join(f"* {item}" for item in existing))
diff --git a/uploader/publications/models.py b/uploader/publications/models.py
index ba8f026..dcfa02b 100644
--- a/uploader/publications/models.py
+++ b/uploader/publications/models.py
@@ -85,7 +85,7 @@ def delete_publications(conn: Connection , publications: tuple[dict, ...]):
             cursor.execute(_phenos_query, _pub_ids)
             _linked_phenos = cursor.fetchall()
             if len(_linked_phenos) > 0:
-                raise Exception(
+                raise Exception(# pylint: disable=[broad-exception-raised]
                     "Cannot delete publications with linked phenotypes.")
 
             cursor.execute(
-- 
cgit 1.4.1