From a719ef6ecfeada70237f26d45c07f7ca3719c974 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 13 Oct 2025 13:16:00 -0500
Subject: Improve application-level and module-level logging.

---
 uploader/__init__.py | 15 +++++++--------
 1 file changed, 7 insertions(+), 8 deletions(-)

diff --git a/uploader/__init__.py b/uploader/__init__.py
index 8b49ad5..98e8141 100644
--- a/uploader/__init__.py
+++ b/uploader/__init__.py
@@ -64,17 +64,13 @@ def setup_logging(app: Flask) -> Flask:
         "SERVER_SOFTWARE", "").split('/')
     return __log_gunicorn__(app) if bool(software) else __log_dev__(app)
 
-def setup_modules_logging(app_logger):
+def setup_modules_logging(app_logger, modules):
     """Setup module-level loggers to the same log-level as the application."""
     loglevel = logging.getLevelName(app_logger.getEffectiveLevel())
-
-    def __setup__(logger_name):
-        _logger = logging.getLogger(logger_name)
+    for module in modules:
+        _logger = logging.getLogger(module)
         _logger.setLevel(loglevel)
 
-    __setup__("uploader.publications.models")
-    __setup__("uploader.publications.datatables")
-
 
 def create_app(config: Optional[dict] = None):
     """The application factory.
@@ -111,7 +107,10 @@ def create_app(config: Optional[dict] = None):
         default_timeout=int(app.config["SESSION_FILESYSTEM_CACHE_TIMEOUT"]))
 
     setup_logging(app)
-    setup_modules_logging(app.logger)
+    setup_modules_logging(app.logger, (
+        "uploader.publications.models",
+        "uploader.publications.datatables",
+        "uploader.phenotypes.models"))
 
     # setup jinja2 symbols
     app.add_template_global(lambda : request.url, name="request_url")
-- 
cgit 1.4.1