From 7cf30517630a1b3ffa50b3eb4f1e9304924d964a Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 3 Dec 2025 12:15:30 -0600
Subject: Add UI element to run QTLReaper script.

---
 uploader/templates/phenotypes/view-dataset.html | 39 +++++++++++++++++++++++++
 1 file changed, 39 insertions(+)

diff --git a/uploader/templates/phenotypes/view-dataset.html b/uploader/templates/phenotypes/view-dataset.html
index 6a261fc..c634a48 100644
--- a/uploader/templates/phenotypes/view-dataset.html
+++ b/uploader/templates/phenotypes/view-dataset.html
@@ -72,6 +72,24 @@
              id="submit-frm-recompute-phenotype-means" />
     </form>
   </div>
+
+  <div class="col">
+    <form id="frm-run-qtlreaper"
+          method="POST"
+          action="{{url_for(
+                  'species.populations.phenotypes.rerun_qtlreaper',
+                  species_id=species['SpeciesId'],
+                  population_id=population['Id'],
+                  dataset_id=dataset['Id'])}}"
+          class="d-flex flex-row align-items-center flex-wrap"
+          style="display: inline;">
+      <input type="submit"
+             title="Run/Rerun QTLReaper."
+             class="btn btn-info"
+             value="(re)run QTLReaper"
+             id="submit-frm-rerun-qtlreaper" />
+    </form>
+  </div>
 </div>
 
 <div class="row">
@@ -165,6 +183,27 @@
                   return `${pheno.InbredSetCode}_${pheno.xref_id}`;
               }
           });
+
+
+      $("#submit-frm-rerun-qtlreaper").on(
+          "click",
+          function(event) {
+              // (Re)run the QTLReaper script for selected phenotypes.
+              event.preventDefault();
+              var form = $("#frm-run-qtlreaper");
+              form.find(".dynamically-added-element").remove();
+              dtPhenotypesList.rows({selected: true}).nodes().each((node, index) => {
+                  _cloned = $(node).find(".chk-row-select").clone();
+                  _cloned.removeAttr("id");
+                  _cloned.removeAttr("class");
+                  _cloned.attr("style", "display: none;");
+                  _cloned.attr("data-type", "dynamically-added-element");
+                  _cloned.attr("class", "dynamically-added-element checkbox");
+                  _cloned.prop("checked", true);
+                  form.append(_cloned);
+              });
+              form.submit();
+          });
   });
 </script>
 {%endblock%}
-- 
cgit 1.4.1